<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19727

Description Pre-mRNA-processing protein like
SequenceMANNPQSSGAQPLRPPTVGSMVPQSFSPSFTMQFRPMIPSQQGQPFIPASSASQQFRPVGQGISSSNIGIPSNQSQAPQYSQPMQQLPPRPAHAQSIPMPYIQQNMPLASSSPQSQQTAVPLNNHMHGLGGPGVPFSSFTAQHTVTAPSQFQPSQMHAPVPQIGGQPWLSTGSQGGPLVTPVQQIGQQSSDMTVTSPAVNVPSTAQQSSSDWQEHTSQDGRRYYYNKKTRQSSWEKPLELMTPIERADASTVWKEFTTQDGRKYYYNKVTKQSKWQVPEELKVAREQAEKPASQEAQSEISATSNSIENVNVSFVEQSSSVTSVSSISTSTITGLAFSQVPATPVVAVNAAPVVVSGSSAFPVAPSTATSAVDVSSLGINVTPSPSAASGSPRVPAVLVSTDATPIASFDNSSSHDVSNSLSGASMQDIEEAKKGMAVAGKIYETPLEEKPVEDEILVYATKQEARNAFKALLEFANVESNWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRMKKAREEFTKMLENCEELTSSTRWSKAINMFEEDERFKAIERPAEREDLFKNYLVDLQKKEKEKAQEEYRRNRLEYRQFLETCGFIKVNTQWRKVQDRLEDDERCSRLEKFDRFEIFQEYIRDLEKEEEEQRKIHKEQLKRVERKNRDEFRKMMEDHVAASILTAKTHWRDYCMKVKDSAPYQAVALNTSGSTPKDLFEDVAEELEKQYHDDKTRIKDAVKSGKVTITSTSFLEDFKAAILEDIGSPPISDVNMKLVFEDLLERAREKEEKEAKKRQRLADDFNDLLCTIKEITASSVWDESRQLFEESSEYRLIGEESLAKEIFEEHVLRLQEKAKEKERKREEEKAKKEKEREEKEKRKEKEKEKEKKDREREKEKEREKEKGKERSKKDEAESENMDVSDSYGPREEKKREKDKDRKHRKRHHSPADDISSDKDEKEESKKSRRHGSDRRKSRKHAYTPESDSESKHKRHKRDHRDGSRRNGGYEELEDGELGEDGEIR
Length1030
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.07
Grand average of hydropathy-1.056
Instability index63.32
Isoelectric point6.39
Molecular weight117476.47
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19727
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.66|      38|      38|     866|     903|       1
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  587-  655 (23.69/ 7.21)	.......KKEKEKA.QEEyrrnrleyrqfletcgfikvntqwRKVQDRLEDDERCSRL.EKfdrfeifqeyiRDLEKE
  866-  903 (56.38/28.16)	EK...ERKREEEKA.KKE........................KEREEKEKRKEKEKEK.EK...........KDRERE
  905-  935 (41.33/18.51)	EK...EREKEKGK.................................ERSKKDEAESENmDV...........SDSYGP
  936-  973 (52.23/25.50)	RE...EKKREKDKD.RKH........................RKRHHSPADDISSDKD.EK...........EESKKS
  974- 1010 (32.03/12.55)	RRhgsDRRKSRKHAyTPE........................SDSESKHKR....HKR.DH...........RDGSR.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     185.42|      39|      40|     212|     250|       2
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  168-  188 (37.67/21.58)	WLSTGSQGG................P..LVTPVQQIG..QQ
  212-  250 (78.38/53.59)	WQEHTSQDGRRYYYNKKTRQSSWEKPLELMTPIERAD..AS
  253-  293 (69.37/46.50)	WKEFTTQDGRKYYYNKVTKQSKWQVPEELKVAREQAEkpAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.96|      19|      20|      18|      36|       3
---------------------------------------------------------------------------
   18-   36 (39.94/22.26)	VG..............SMVPQSFSP..SFTMQFRP
   38-   58 (29.99/14.74)	IP..............SQQGQPFIPasSASQQFRP
   59-   91 (25.03/10.99)	VGqgisssnigipsnqSQAPQYSQP..MQQLPPRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     335.01|      64|      65|     480|     543|       4
---------------------------------------------------------------------------
  418-  465 (39.75/21.83)	...................S....NSLSGASMQDIeeakkgmaVAGKIY.....ETPLE.E............KPVEDEILV..............YATKQE............A
  466-  532 (94.88/64.72)	RNAFK.ALLE...FA.nveS....NWTWEQAMRVI........INDKRYGA..LKTLGE.R............KQAFNEYLG..............QRKKLEAE..ERRMRMKKA
  533-  603 (60.19/37.73)	REEFT.KMLE...NCeeltS....STRWSKAINMF........EEDERFKA..IERPAE.R............EDLFKNYLVdlqkkekekaqeeyRRNRLE.............
  675-  747 (69.75/45.17)	RDEFR.KMMEdhvAA....SiltaKTHWRDYCMKV........KDSAPYQAvaLNTSGStP............KDLFED.V................AEELEKQyhDDKTRIKDA
  761-  808 (37.55/20.12)	LEDFKaAILE...................................................digsppisdvnmKLVFEDLLE..............RAREKEEK..EAKKRQRLA
  809-  855 (32.88/16.49)	.DDFN.DLLC...TIkeitA....SSVWDESRQLF........EESSEYRL..I...GE.E.........slaKEIFEE....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.74|      23|      45|     352|     374|       5
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  352-  374 (38.12/24.85)	PVVVSGSSAFPVAPSTATSAVDV
  376-  394 (29.08/17.07)	SL...GINVTP.SPSAASGSPRV
  395-  417 (35.55/22.64)	PAVLVSTDATPIASFDNSSSHDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.40|      18|     107|     190|     210|       7
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  144-  161 (30.17/ 9.54)	TVTAPSQFQPSQMHAPVP
  193-  210 (30.22/16.34)	TVTSPAVNVPSTAQQSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.11|      18|      31|      93|     114|       8
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   94-  115 (27.77/23.60)	AQS.IPM.........PyiqqNMPLASSSPQS
  116-  143 (22.34/ 9.73)	QQTaVPLnnhmhglggP....GVPFSSFTAQH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19727 with Med35 domain of Kingdom Viridiplantae
Unable to open file!