<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19718

Description Mediator of RNA polymerase II transcription subunit 33A like
SequenceMAVTIPQTPWDGVLELTKSSQERGIDPLTWAIQVSSSLSSAGVPLPSPELAEFLVSHICWENNVPITWKFLEKALTMKIVPPMLVLALLSTRVIPSRRSCPAAYRLYLELLKRHAFALSSQIKYSNYEKIMRSIDDVLHLSQIFSLQASDMGFLVVEFVFSIVWQLLDASLDDEGLLELTSEKKSRWPTGTQDMELDSNNISDDKRMEHHEGMQKLNTVIAIEIIGDFLKNKVLSRILYLARRNMSSHWGCFIQHVQLLAANSSALRNSKNITPDALLQLTSDKRIVLSRECKTSLQRQFHAVIAGSLVSSACQCHGTSQSALWLPFDLFLEDSMDGSQVTATSAAEILTGLAKALQAVNQTSWKDTFIGLWIAGLRLVQRERDPSEGPVPRLYTCLCMLLSITPLAILNIIEEEEISLVNEAECSLTSQRKEKHVSENLRRDLVSSLQQLDDYEGLLTAPLPVIPVANQAAAKAMMFLSGVAVGNGYLDGVSLNDMPVNCSGNMRHLIVEACIARDLLDKSAYLWPSYVKGRCNRLPRSVSGQIPGWSSLMKGSPLSPPMVNALVSTPASSLGEIEKLYEIAVSGSDDEKISAATILCGASLIRGWNIQEHTVLLITRLLSPPVPADYSGSESHLIGCAPFLNVLLVGISSADCVQIFSLHGMVPQLAGTLMPICEVFGSCSPDESRTLATGEEISSHAVFSNAFTLLLKLWRFDRPPLEHVTGDATPVGSQLTPEYLLLVRNSQLASYAVTSKDQHKRKRLSKFSCPSPTGPMFIDSFPKLKCWYRQHQECIASTLSGLVHGNSVHQIVDGLLNMMFGKVNRVGHSLTPTPSGSSNSSGSATEDTSLRLKLPAWDIMEAVPFVLDAALTACAHGRLSPRELATGLKDLADFLPASMATIVSYFSAEVTRGIWKPASMNGTDWPSPAANLAFVERQIKKILACTGVDVPSLVAGGSFPATLPLPLAALISLTITFKLDKSSERLLFLIGPALDTLAAGCPWPCLPIIASLWAQKVKRWSDYLIFSASRAVFHHNSDAVDQLLRHCFTCTLGLDSTPISSNGGVGPLLGHGFGFHYSGGISPVAPGILYLRVHRSVRNVMFMTEEIVVLLMRSVKDIASCGLPREGMDNLKKTKYRMRYGQVSLAAAMNRVKLAASLGASFVWITGGLSLVQALIKETLPSWFISVHESESDGGESGGMVRMLRGCALAYFAVLSGAFAWGVDSSSLASKRRRNVLGAHLEFVANVLDGKVSLGCDWVTWRAYVAGFVSLMVGCTPIWMLEVDVDVLKRVSKGLRQWNEEELALALLGIGGVGTMGAAAEMIIECGF
Length1327
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.07
Grand average of hydropathy0.157
Instability index46.81
Isoelectric point6.60
Molecular weight144558.77
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19718
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     197.40|      51|      93|     574|     624|       1
---------------------------------------------------------------------------
  574-  624 (86.04/61.59)	GEIEKLYEIAVSGSDDEKISAATILCGASLIRGWNI..QEHTVLL.ITRLLSPP
  637-  667 (40.44/24.20)	IGCAPFLNVLLVG.....ISSADCVQIFSL.HGMVP..Q...............
  670-  719 (70.92/49.20)	GTLMPICEVFGSCSPDESRTLAT...GEE.ISSHAVfsNAFTLLLkLWRFDRPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.75|      22|      95|    1156|    1186|       2
---------------------------------------------------------------------------
  363-  386 (39.24/17.24)	SWKDTFIglWI.AGLRLVQ...RERDPS
 1156- 1181 (31.51/35.78)	SLGASFV..WItGGLSLVQaliKETLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.26|      34|      93|     134|     169|       3
---------------------------------------------------------------------------
  134-  169 (53.17/45.01)	IDDVLH...LSQIFSLQASDMGFLVVEFVFSIvwQLLDA
  225-  261 (57.08/39.83)	IGDFLKnkvLSRILYLARRNMSSHWGCFIQHV..QLLAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.92|      17|      95|     720|     736|       4
---------------------------------------------------------------------------
  720-  736 (30.85/17.13)	LEHVTGDATPVGSQLTP
  815-  831 (32.07/18.07)	LNMMFGKVNRVGHSLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     243.77|      74|     485|     476|     572|       7
---------------------------------------------------------------------------
  476-  572 (117.86/99.25)	MMFLSGVAVgNGYLDGVSLNDMPVNCSgnmrhliveaciardlldksayLWPSYVKGRCNRLPRSVSGQIPGWSSLMKGSPLSPPMVN..ALVSTPASS
  985- 1060 (125.91/67.87)	LLFLIGPAL.DTLAAGCPWPCLPIIAS......................LWAQKVKRWSDYLIFSASRAVFHHNSDAVDQLLRHCFTCtlGLDSTPISS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19718 with Med33 domain of Kingdom Viridiplantae
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