<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19709

Description Mediator of RNA polymerase II transcription subunit like
SequenceMADKQLIVAIEGTASMGPHWQSIVSDYLDKIIRTFCSNKLAGQKSSVSNVEFALVAFNAHGSYSACLVQRSGWTRDVDIFLQWLAAIPFAGGGFNDAAIAEGLGEAIMMFSGVSGSQTQQNVAGQRHCILVAASNPYPLPTPVYRPPLQNLEQGENIEVQTQSRLSDAETVAKSFGQCSVSLSVICPKQLPKLRAIYNAGKRNPRAADPPVDSVKNPFFLVLISEDFMEARASLSRPGITGLASSQSPVKMDIASVPPVSGPPPTSILPVNGSITNRQPISVGNIPPATVKVEPSTVGSMVSGPSFPHIPAVPRAASQGVPSLQTSSPMSSQEMISNNENVQDLKPMVSSMAQPLRPVGPAAANVNILNNLSQARQVMNSAALTGGTSIGLQSMGGTPMAMHMSNMISSGMASSVPAAQTVISSGQSAIPSMSGSGSLTGTAQPAPNSAPGSFTSSASNMSATSNLGISQTLGNLQSGVSMGQSAPGMNQGNLPGAQMVQNGISMNQNMMSGLGPSGMSSGTGTMMPTPGMTQQVQPGMQSLGVNNSSATNIPMSQVQQTSSGLQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQQQQQLQQQQQQQQQQLQQQQQQQMQAQQHQQLQQQQLPQLQQQTLPQLQQQQTLSQMQPQQQTLPQMQQQHQQQQIPQMQQQPQQQQMVGTGMGQAYVQGPGRSQLVSQGQVSSQGPPNMPGGGFMN
Length828
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.04
Grand average of hydropathy-0.330
Instability index64.72
Isoelectric point9.18
Molecular weight88133.98
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19709
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.06|      18|      18|     702|     719|       1
---------------------------------------------------------------------------
  694-  709 (28.17/ 7.08)	PSQQQ...QQqQQQQLQQQ
  710-  728 (34.35/10.22)	QQQQQQQLQQqQQQQMQAQ
  729-  744 (26.38/ 6.18)	QHQ...QLQQqQLPQLQQQ
  770-  787 (38.16/12.15)	QQHQQQQIPQ.MQQQPQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     283.91|      48|      49|     300|     347|       3
---------------------------------------------------------------------------
  235-  280 (50.22/18.69)	..SRPGITGLassqsPVKMDIAS.....VPPV....SGPPPTS......ILP...VNG.SITNR..QPI
  300-  347 (81.43/35.33)	MVSGPSFPHI.....PAVPRAASQG...VPSL....QTSSPMSSQ...EMIS...NNE.NVQDL..KPM
  354-  399 (30.51/ 8.18)	.......PLR.....PVGPAAANVN...I..LnnlsQARQVMNSA...ALTG...GTSiGLQSMggTPM
  406-  442 (31.05/ 8.47)	MISSGMASSV.....PAAQTVISSGqsaIPSM....SGSGSLTGT...A....................
  444-  478 (37.45/11.88)	...............PA.PNSAPGS...FTS......SASNMSAT...SNLG...ISQ.TLGNL..QSG
  509-  554 (53.26/20.31)	MMSGLG............PSGMSSG...TGTM....MPTPGMTQQvqpGMQSlgvNNS.SATNI...PM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.07|      18|      50|     751|     768|       5
---------------------------------------------------------------------------
  751-  768 (34.97/15.06)	QQQTLSQMQPQQQTLPQM
  804-  821 (32.10/13.15)	RSQLVSQGQVSSQGPPNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.81|      32|      50|     111|     150|       6
---------------------------------------------------------------------------
  111-  144 (53.24/40.38)	SGVSGSQTQQNVAGQrhC.ILVAASNPYPLP..TPVY
  163-  197 (44.57/18.64)	SRLSDAETVAKSFGQ..CsVSLSVICPKQLPklRAIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.47|      16|      16|     562|     577|       7
---------------------------------------------------------------------------
  562-  577 (26.92/16.86)	SGLQSAQSKYVKVWEG
  580-  595 (25.55/15.56)	SGQRQGQPVFITRLEG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19709 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AALTGGTSIGLQSMGGTPMAMHMSNMISSG
2) KVEPSTVGSMVSGPSFPHIPAVPRAASQGVPSLQTSSPMSSQEMISNNENVQDLKPMVSSMAQPLR
3) QQTLSQMQPQQQTLPQMQQQHQQQQIPQMQQQPQQQQMVGTGMGQAYVQGPGRSQLVSQGQVSSQGPPNMPGGGFMN
4) SVPAAQTVISSGQSAIPSMSGSGSLTGTAQPAPNSAPGSFTSSASNMSATSNLGISQTLGNLQSGVSMGQSAPGMNQGNLPGAQMVQNGISMNQNMMSGLGPSGMSSGTGTMMPTPGMTQQVQPGMQSLGVNNSSATNIPMSQVQQT
381
291
752
414
410
356
828
560










Molecular Recognition Features






MoRF SequenceStartStop




NANANA