<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19707

Description Pre-mRNA-processing protein like
SequenceMPPGMSGTPMTPGPPGISSSAPFLLNLTVTSGAIDSSSAALVRPTMPAAPGPLNPAVQLQAYPPYPSVPPIAAPSHGLWLPPPQLSGLPRPPFLPYPATFPGPFPLPTRGLSLPSVPLPDAQPPGVTPLGMPIGTSMITVTSGSPLTTGSWMQQETPPGIDNSKLVTNVGTKDGAAISKQLDAWTAHKSETGVVYYYNALTGESTYEKPYGFKGEPDKVTAQPTPVSWEKLTGTDWALVTTNDGKRYYHNTKTKLSSWQIPSEVTELGKKQDGDALKEESMSVTNTNVLTEKGSAPISLSTPALNTGGRDATALRASGVLVSSSALDLIKKKLQDSGAPATSSPAPVLSESVASELNGSRAVEATVKVAQTESSKDRLRDANGDGNMSDSSSESEDVDSGPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPGNSARRALFEHYVRTRAEEERKEKRAAQKAAIEGFKQLLEAAKEDIDHSTDYQTFKKKWGDDLRFMALDRKERELLLNERILPLKRAADEKARAIRAAAASSFKSMLREKADITTSSRWSKVKDSLRNDPRYKYVKHEDREILFNEYIFEIKFVEEEAERAERAKQEEQEKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVETIKDSQASWTESKTKLEKDPQGRAANPYLDQSDLEKLFREHVKILHERCVYEFRGLLSDVLTSEVAAQETDDGKTAITSWSTAKRLLKADPRYTKMARKERESLWRKHVEEMQRRQQKSAVGDKEGGVNKRAETRSRRSVDYGKYLSGGSRGIHE
Length809
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.06
Grand average of hydropathy-0.732
Instability index48.96
Isoelectric point8.99
Molecular weight89697.14
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19707
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     433.45|      65|      65|     472|     536|       1
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  407-  468 (53.91/30.27)	..IIQFKEML.........KE....RGVAPF.SKWEKELpkivfdpRFKA....IpGNSARRALFEHYVRT..RAEEERkeKRA
  472-  536 (103.69/65.29)	AAIEGFKQLL.EAAKEDIDHS....TDYQTFKKKWGDDL.......RFMA....L.DRKERELLLNERILPLKRAADEK..ARA
  540-  603 (94.72/58.98)	AAASSFKSML.R.EKADITTS....SRWSKVKDSLRNDP.......RYKY....V.KHEDREILFNEYIFEIKFVEEEA..ERA
  606-  640 (44.65/23.76)	AKQEEQEKL.....KE..................RERAL.......R.........KRKEREEQEVERV....RS...K..AR.
  650-  709 (63.44/36.97)	.......ALLvETIK...DSQ....ASWTESKTKLEKDP.......QGRAanpyL.DQSDLEKLFREHVKILHERCVYE..FRG
  713-  774 (73.02/43.71)	DVLTS......EVAAQETDDGktaiTSWSTAKRLLKADP.......RYTK....M.ARKERESLWRKHVEEMQRRQQKS..A..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     149.80|      21|      21|      44|      64|       2
---------------------------------------------------------------------------
    3-   22 (30.19/10.15)	P...G.MsgtP........MT.P..GP..........PGISSSA..P
   44-   64 (42.96/17.20)	P...T.M...P........AA.P..GPLN........PAVQLQAYPP
   66-   90 (28.19/ 9.05)	P...S.V...P......piAA.PshGLWL........PPPQLSGLPR
   91-  123 (24.92/ 7.25)	PpflP.Y...P........ATfP..GPFPlptrglslPSVPLPDAQP
  128-  157 (23.54/ 6.48)	P...LgM...PigtsmitvTS.G..SPLT........TGSWMQQETP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     193.11|      39|      60|     242|     280|       3
---------------------------------------------------------------------------
  192-  223 (44.65/28.31)	..GVVYYYNALTGESTYEKP.....YGFK..GEPDKVTAQP
  242-  280 (66.33/46.16)	NDGKRYYHNTKTKLSSWQIPSEVTELGKK..QDGDALKEES
  305-  343 (47.94/31.02)	NTGGR..DATALRASGVLVSSSALDLIKKklQDSGAPATSS
  356-  384 (34.20/19.70)	LNGSRAVEAT.VKVA..QTESSKDRL.RD..ANGD......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.08|      12|     118|     167|     178|       4
---------------------------------------------------------------------------
  167-  178 (22.08/12.94)	TNVGTKDGAA.IS
  286-  298 (17.00/ 8.48)	TNVLTEKGSApIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19707 with Med35 domain of Kingdom Viridiplantae
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