<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19700

Description Mediator of RNA polymerase II transcription subunit 33A like
SequenceMAVASQRSVWDSVIEMTKSAQERGGDPVMWAIQLSSALKTAGVPLPSTELADLLVFHICWSNNVPIAWKFLEKALMMNIVPPMHVLALLSVSVIPSRRFHPAAYRLYMELLKRHAFSFTSQTNCPNYKRTMKSIYEVLHLSQIFSIPTSEPGQVIVGFVFSIVWRLLDASLDDEGLLELTPEKKSRWLTGTQDMEIHSHDSFNEKRTGRHEGMCKINTVMAVEIIGDFFKHKVTSRILYLARRNMRSHWLCFIQHLRLLTEQSSALRSSKDITPEALLQLTSDTREVLSRKCKTSSQKQFHAVMASGSLASSASQCHGTSRSALWLPFDLFLEDAMDGSKVTAMSAVEVLMGLAKALQAVNQTTWQDTFLGLWIAALRLVQRERDPSEGQGPVPRLDTCLCMLLSVTTLAIFEIIEEEAAQNNEAECTTNCQRKEKHVSGKRCRDLIASLQQLGDFEDLLAPPVPVISVANQAAAKAMVFLSGLTVGSGSYLDGMSLNDMPVNCSGNMRHLIVEACIARNILDTSAYLWPGYVKGPSNQIPRSTSGQMPGWSSLMKGSPLTPPMVNALVSTPASSLAEIEKIYQIAVNGSGDEKISAAKILCGASLMRGWNIQEHTVLLITKLLSPPVPADYSGSESHLIRYAPFLNVLLVGISSIDCIQILSLHGVVPALAGALMPICEVFGSMVPWTLPTGEEISAHAVFSNAFTLLLKLWRFDRPPLEHVMGDVAPVGSQLTPEYLLLVPALAGALMPICEVFGSMVPWTLPTGEEISAHAVFSNAFTLLLKLWRFDRPPLEHVMGDVAPVGSQLTPEYLLLVRNSQFASYANTPRDQHKSKKVSKYSSPSSTEPIFMDTFPKLKGWYRQHQECIAAILSGLKHGSPVHQIVDGLLNMMFRKVNGGSQSLTPTTSGSSNSSGPLTEDVSLQLKLPAWDILEAVPFVLDAALTAYAHGRLSPRELVTGLKDLADFLPASMATIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLAIVEQQIKKILAGTGVDVPSLAAGGSVPATLPFPLAVLVSLTITYKLDRTAECLLFLIGPALISLAAGCPWPCFPIIASLWAQKVKRWSDFLIFSASRTVFHHNSDVVHQLLRSCFTSTLGLNSSPISSNGGVGALLGHGFGSHFSGGISPVAPGILYLRVHRSVRNVMFMTEEIVVLLMCSVKEIVSCGLPTEKMDKLKTTKYGMRYGQVSLAAAMLHVKTAATLGASLVWISGGLSLVQSLIRETLPSWFISDHKSELDGGDSCGMVPMLRGYALAYFAVLSGTFAWGVDSSSPASMRRKKVIGTHLDFLASALDGKILLGSDRATWRAYVSGVVSLMVGCTPMWLREVDVDVVKRVGKGLVKWNEEELALALLGVSGMGAMGAAAELIIEGEF
Length1401
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.08
Grand average of hydropathy0.182
Instability index46.77
Isoelectric point7.37
Molecular weight152520.52
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19700
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     364.49|      71|      71|     669|     739|       1
---------------------------------------------------------------------------
  565-  639 (66.24/36.94)	VnalvSTPASSLAEIEKIYQIAVN...GSGDEkISAAKILCGAslmrgwniqeHTVLLitKLL...SPP...VPADYSGSESHL....
  669-  738 (148.78/92.88)	.....PALAGALMPICEVFGSMVPWTLPTGEE.ISAHAVFSNA..........FTLLL..KLWRFDRPPLEHVMGDVAPVGSQLTPEY
  739-  812 (149.47/93.34)	L.llvPALAGALMPICEVFGSMVPWTLPTGEE.ISAHAVFSNA..........FTLLL..KLWRFDRPPLEHVMGDVAPVGSQLTPEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.40|      30|     390|     481|     511|       2
---------------------------------------------------------------------------
  481-  511 (51.52/37.25)	LSGLTVGSGSY..LDGMsLNDMPVNCSGNMRHL
  872-  903 (47.87/29.42)	LSGLKHGSPVHqiVDGL.LNMMFRKVNGGSQSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     326.16|     103|     867|     326|     449|       3
---------------------------------------------------------------------------
  326-  434 (167.35/116.59)	LPfdlflEDAMDGSKVTAMSAVEVLMGLAKALQAVNQTTWQDTFLgLWIA.ALRLVQ...RERDP....SEGQGPVPRLDTC.LCMLLSVTTLAIFEIIEEEAAQNNEAECTTNCQRK
 1196- 1307 (158.81/83.54)	LP.....TEKMDKLKTTKYGMRYGQVSLAAAMLHVKTAATLGASL.VWISgGLSLVQsliRETLPswfiSDHKSELDGGDSCgMVPMLRGYALAYFAVLSGTFAWGVDSSSPASMRRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.58|      26|     861|     216|     278|       5
---------------------------------------------------------------------------
  248-  278 (38.12/83.32)	HWL...CFIQHLRLlteQSSALRSSKDITpeALL
 1114- 1142 (42.46/11.91)	HQLlrsCFTSTLGL...NSSPISSNGGVG..ALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.58|      39|     120|     905|     954|       6
---------------------------------------------------------------------------
  916-  954 (66.98/58.56)	PLTEDVSLQLKLPAWDILEAVPFVLDAALTAYAHGRLSP
 1039- 1077 (68.60/37.69)	PLAVLVSLTITYKLDRTAECLLFLIGPALISLAAGCPWP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19700 with Med33 domain of Kingdom Viridiplantae
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