<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19676

Description Uncharacterized protein (Fragment)
SequenceVSHLKKYIKEIGQKTKDDRLKKRAKDLVRRWHDMVEEHSSVLTNAASIFQGDSINDQNLHSGPVSHQVSEPLVHPVLRSSARLRSRASTSPGGVMMSSSSIGITSSSNIQRKRSPRVSSVHGKKMSCHEVQTTTTGNTFAQMATATAVKTDAVPRTCGSFKKPRKRSQRVDSKEMSFTPSKPDVQCERAVTRSAGVIKAKVTTATPKVMNVDKSVCDPVAMASATDSITTTNPGTSTNVPKGMFTAQCVNVPNFALTSDNTASNAPEPATRVSPVDFAMLPSKQILPGCTSDYLTELQAFKERTSRMRTTKQLAAFVQRKGRPSASKGNLKESPSDVAKFKEEHIKRYIATQSKYCHMGEDPEEAKQEILSKLPPLDVGVICWSRDEFKPPKEVTEELVTMLHTEHLDGINGTFNVGAKPGEVGEFREWNEEVSKVSYNGELLQIAPYVLLE
Length452
PositionUnknown
OrganismBlattella germanica (German cockroach) (Blatta germanica)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blaberoidea> Ectobiidae> Blattellinae> Blattella.
Aromaticity0.05
Grand average of hydropathy-0.564
Instability index50.07
Isoelectric point9.37
Molecular weight49660.88
Publications
PubMed=29403074

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19676
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.07|      13|      52|     111|     126|       1
---------------------------------------------------------------------------
  111-  126 (20.04/22.97)	RKRSPRVSSvhgKKMS
  164-  176 (25.03/16.70)	RKRSQRVDS...KEMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.46|      13|     100|     134|     148|       3
---------------------------------------------------------------------------
  134-  146 (22.70/ 7.22)	TTGNTFAQMATAT
  235-  247 (20.76/11.88)	TSTNVPKGMFTAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19676 with Med26 domain of Kingdom Metazoa
Unable to open file!