<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19658

Description Uncharacterized protein
SequenceMERKLCNLDIDNENGIDGEPDNSEPVTYCVQALLAIEVLLNPSSDTQMFVNELLMVQRLKGYNLPRLYAEIMRACLITLNDVQGTGIESQWGAFTFLKVPHVLRQIHFTSRGSEIGGDSTEKLEYSQDVVDALELLLQYTPLLDIMDAKCACNCLECLLKELLRNGLVTENHVSHFTSKRSVMTLALMMQDYREAMSATMPKLEQSPAQTPSIPKVIVRAEPTLARILKTLDADSVKVQEPLLSVLCQVLTGKSFELILAVAAVEGKLRTLVSKLLKFNECSKQVGVEGSKPSPQTRAMLFDVTFLMLCSIEVLKFRYQEDLDRAVDLAFGVFHLDVEHCTLALLLQVLPQYLHNQMQSEELVEPQASALAKLCAYCVFAALEFQNNTTPGQVNSRKRSWREMEGELKDLEALCPSSKLLRMTSVVPETADTAALFGTGTTSTQNSTRPYNNNNQPTTIKEPLQKALNDLFHTFTVISGRDGEVSQQTHFVCKFLQYVVRCGRDRTRLVLQGMPNTLVPCLLRSLPDLFTTDLLLRLYDINTVAGRKATARDLCMLRNMNLKMSMKDIM
Length569
PositionTail
OrganismBlattella germanica (German cockroach) (Blatta germanica)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blaberoidea> Ectobiidae> Blattellinae> Blattella.
Aromaticity0.06
Grand average of hydropathy-0.059
Instability index41.37
Isoelectric point5.74
Molecular weight63804.37
Publications
PubMed=29403074

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19658
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     265.07|      87|     103|     242|     331|       1
---------------------------------------------------------------------------
  242-  331 (135.75/93.28)	LLSVLCQVLTG..KSFELILAVAAVEGKLRTL.VSKLLKFNECSKQVGVEGSKPS.PQTRAMLFDVTflMLCSIEVLkFRYQEDLDRAVDLA..FG
  345-  437 (129.32/79.22)	LLQVLPQYLHNqmQSEELVEPQASALAKLCAYcVFAALEFQNNTTPGQVNSRKRSwREMEGELKDLE..ALCPSSKL.LRMTSVVPETADTAalFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.80|      18|      56|     456|     473|       4
---------------------------------------------------------------------------
  456-  473 (32.92/22.78)	PTTIKEPLQKALNDLFHT
  514-  531 (33.88/23.67)	PNTLVPCLLRSLPDLFTT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19658 with Med24 domain of Kingdom Metazoa
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