<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19634
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPVSRDPPPTPPKPQSSAISWSKYGFITYAHPEPSSGHNMCLTYLENTNGKDWQLAKTTPLTLKPLDDGVVSEIERLRWSNLLTDLAVWDVKGNFFILLAGVGLINDKKTEEANGHRANGSKTSNGAKDLNPNGLPRGDGPSYELTSYNHTEMIYRDIAPPQAHTKCVAFEWLNIEKPQIVNKPATLMGEENGVANYAYGVTQHHPPGTSHPIPTKQACVAVRQDGLFSLYYQGEHKVEYHKLAYNLAPDGREGSCTFTKAAVGFNSDKKIVVVAYDARSDLVLTYVISIDWGFLVESAQRQRSDPHYHTPKDSQTPPLLLCALVHEMRPEPTASCDFGEEKAFGKPEVVQQTLKLIELFSPYFQQSSNLEILITYECMNPVGSQPYTLAYRYNLENAMDSVGDLFDSMGDANATDSREGLLRLVLQGHISLSKQVQQIETAISESLLLFIYTDGTIDAVNRETWELVPLLDLKIEGQEQTTYPSTITSLLDCGFLFPELGPSPALLAVSPNMAAFVHYENGQLQFRPLERSSTKSVLLCGIGFAYMHACACYSTTSSDDLLVMLRNELFKTELEQPELAGHLVDLAMTESHKAINFQLNSFGKESVDKLLSNPPLQRLLSLQLVLGELHTKNKAIKDMAWIVLNLRSTSFGIMFSLSSIYRQMSKKKPAEDLLQDSVSRAECIMLLVGNIRWLIDLIVYFNQELLQLAFSKNNPEQSKVTVDNSVVLPVILGKVPRLFLMYSLSSIGKTHEILKKLYKELTESNKLYTPMKEALNRFFTACNSLPLNLGLFENFLRECEVYVNKELNNIVSNDRAQLLKLEQQLFCRGFVPDEVKYMANVLIERHSATISRDLKLADLYFYQNDWIDVGISRKEFGKPYVPLEEHFKPMIPRLRYSENEVVDTLRKIVINAGPTKVYKMQSSIIGR |
Length | 927 |
Position | Tail |
Organism | [Candida] pseudohaemulonis |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Metschnikowiaceae> Clavispora> Clavispora/Candida clade.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.234 |
Instability index | 47.33 |
Isoelectric point | 5.88 |
Molecular weight | 104288.22 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP19634
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 104.12| 35| 60| 595| 630| 1
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595- 630 (52.53/36.84) INFQLNSF.....GKESVDKLLSNpPLQRLLSLQLVLGELH
653- 692 (51.58/30.97) IMFSLSSIyrqmsKKKPAEDLLQD.SVSRAECIMLLVGNIR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 557.02| 185| 223| 155| 359| 2
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155- 359 (276.11/307.39) YRDIAPPQAHTKCVAFEWlNIEKP.QIVNKPATLMGEENGVANYAyG....VTQHHppgTSHPIPTKQACVAVRQDGLFSLYYQGEHKVeYHKLAYNLAP......DGREGScTFTKAAVGFnSDKKIVVVAYDARSDLVltyVISIDWG..flvESAQRQrsdphYHTPKDSQTPPLLLC....ALVHEMRPEPTASCD....FGEEKAFgKPEVVQQTL..KLIEL
376- 586 (280.90/233.20) YECMNPVGSQPYTLAYRY.NLENAmDSVGDLFDSMGDANATDSRE.GllrlVLQGH...ISLSKQVQQIETAISESLLLFIYTDGTIDA.VNRETWELVPlldlkiEGQEQT.TYPSTITSL.LDCGFLFPELGPSPALL...AVSPNMAafvhyENGQLQ.....FRPLERSSTKSVLLCgigfAYMHACACYSTTSSDdllvMLRNELF.KTELEQPELagHLVDL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 64.18| 17| 815| 65| 81| 5
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65- 81 (31.25/20.30) PLDDGVVSEIERLRWSN
882- 898 (32.93/21.77) PLEEHFKPMIPRLRYSE
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