<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19629

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMLPHKNNQPTSSLPVSRVGLSVKLNHLAVPGLNSRPTSRPNTPSAYVTSSLNPTKNIPVTSTSVNSKIKNLDEARQFEELAIISSIREFESELVELSLSISSFREENIPEHVKSLIQLDKKISAEQQNLRRHQEYGAEIQTLQKENDELSQESSRLLKELISCRAELKKLPRLPAASSSTRESRLKEIGVQELLDYSMTLAKFSKAPTTANGQLPHPNNFIWPAEDALRRGLLALTSLKPDEVIKAELGETEPAEEEKVEEDDVEMEDVADMDAPSTNVKKGPSAPARKAEPAKAPEALNLDLFDGDDSDDSD
Length313
PositionMiddle
Organism[Candida] pseudohaemulonis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Metschnikowiaceae> Clavispora> Clavispora/Candida clade.
Aromaticity0.03
Grand average of hydropathy-0.650
Instability index52.73
Isoelectric point4.96
Molecular weight34582.30
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19629
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.96|      20|      43|       8|      27|       1
---------------------------------------------------------------------------
    8-   27 (32.75/20.16)	QPTSSLPVSRVGLSVKLNHL
   30-   43 (17.39/ 7.37)	PGLNSRPTSRPNTP......
   52-   71 (29.82/17.72)	NPTKNIPVTSTSVNSKIKNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.96|      35|      75|      83|     119|       2
---------------------------------------------------------------------------
   83-  119 (52.05/31.96)	ISS.......IREFESELVELSLSISSFREENI......PE.HVKSLiqLD
  122-  160 (21.52/ 7.05)	ISAeqqnlrrHQEYGAE.......IQTLQKENDelsqesSR.LLKEL....
  161-  195 (49.39/25.10)	ISC.......RAELK.KLPRLPAASSSTRESRL......KEiGVQEL..LD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19629 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EVIKAELGETEPAEEEKVEEDDVEMEDVADMDAPSTNVKKGPSAPARKAEPAKAPEALNLDLFDGDDSDDSD
2) VPGLNSRPTSRPNTPSAYVTSSLNPTKNIPVTSTSVN
242
29
313
65










Molecular Recognition Features






MoRF SequenceStartStop




1) VADMDAPSTNVKKGPSAPARKAEPAKAPEALNLDLFDGDDSDDSD
269
313