<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19625

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMSDVVAQRSRDAVALLAVVEDAQAKLTQLEATARGLIEELAASGAQATPRLRELLASGERLVAAVTAAGGKLAPHLPSGNALPGAPDRVAVDAVWARELQPQAEGAAAATATTPVVRPAATLQALASTLAALPGCHLVLLRGRSPAGKPEEASTVLLHCGRAFAAAVHLQSPGGLLPLRVGVMSTAEAAAATAAGSGDPLSGSSVSLWAPSRHAVFQQLSAQAAAALEHFLQQSSNCGGGAAASALELLLLWLATCGDVFTRRAAASDALLLADPAAGGAGLLPPLRRPYEGLGWEALWAAALNPQLRSAEHLATELA
Length318
PositionTail
OrganismMicractinium conductrix
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Trebouxiophyceae> Chlorellales> Chlorellaceae> Chlorella clade> Micractinium.
Aromaticity0.03
Grand average of hydropathy0.288
Instability index52.12
Isoelectric point5.98
Molecular weight32054.21
Publications
PubMed=29178410

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19625
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     295.04|      83|      88|     122|     209|       1
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   34-  119 (81.88/31.34)	.RGL.IEELAA.........SGAQATPRLRE......LL....ASGERL....VA..AVtaaggklapHLPSgnalP....GA...PDRVAVDAVwarelqpqAEGAAAATATT..P......VVRPA
  122-  209 (134.83/67.90)	LQAL.ASTLAALPgcHLvlLRGRSPAGKPEEASTV..LL....HCGRAF....AA..AV.........HLQS....P....GGLL.PLRVGVMST........AEAAAATAAGSgDPLSG.SSVSLWA
  216-  300 (78.32/29.66)	FQQLsAQAAAALE..HF..LQQSSNCGGGAAASALelLLlwlaTCGDVFtrraAAsdAL.........LLAD....PaaggAGLLpPLR..........................RPYEGlGWEALWA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19625 with Med27 domain of Kingdom Viridiplantae
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