<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19619

Description DNA-directed primase polymerase
SequenceMQPQPTPGDPRSQLAALLAGSQPRSEPPAGAKGRRSKPHPLYGPAPRRTGGSGGGSGGGGTSQNAARRSKSQLPSPVGLSKARPPRSPTAAAGSSRHSSQATWRTGGPDSAASSPGKHTQQPGSPPALLTQLCSPAGSPSQLLQFGRLRINSAPTSPQLSPRPQVQSASPAAQHCRASPPGGKPPASQLVTSLWQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHAAASPVPLLAPDSEDEDWCIPASPAVCAQDGAPSAPALIPLSSSFGSPQPPSQQQPNQATPLSQQPADAAGHQAAAAAATPASPFRSSQERREEIAILSEMAEAGADEWSSQEAEAPHPPSQQQQQQQQQQSSPRGAGSLVAAGPGQLCNQQGCSQQPASQQGGVHLVCSLTSQEASEVADPWSQPEDDDEEQRRRQQQAEEERQHWALEAAALLQQQQGAEQQLMDVRESFAAQREAFDAADWHNRRWMPLLPQPTVVASQIPAEELLPMSGSAAAAAAQQAAASSSSGGAQASGRSRGHPGGGQEADSAAAGAAPQLAADFLSRFRQGALPPPDSSGYNMAPLEPLLKRQREEAEAEQARQQQQQEAAGRAAREYEARLRELQQAAAEQQQQQQQQQQGTGGPQQRQVQPAGPSSSGAVGHKAPQQAAGAAGGAAAAAAAGQEQHQEAVRAFCVERRGRSGAYYRTFTAASYPAVWQAFRRTRTEERHWYEVIREGRPAHLYFDLEYPAPLNPQLEGDALVDCLLGHVAAQLRRHFGLGLDRRCVYELDSSTPAKFSRHLTVRLPGHAFVSNHAMGKFVGQVLAASGGELQVVRGEAEGRPQLGPLVDMAVYSKNRHWRMSFCCKGGKAAVLRPTARFATAPGSGTSNAHVFLDTLVCNVSPSARLLQMPNPLPMAGGGGCGGRGPVAAGAVLPAGGLRVAWKHDAADATIPPDQLEELKRLAEAALPFIERAATHRAGGAPARARTLAFCGSGATVAYSMIGPGSHYCENMGRPHASNHVFFVADFHRGAYAQKCHDPDCARFRSGWMPLPRELCLPEPPSPAGPAPSGSGGRAPQGAGGSGDESSQLADVLGKLTALLAKGGGEADGLDDLLEQLGRLQAKLNGTSEPAFKAIEDAQARLQAAIVALQGAVDRLTPPPGYRPPAPGDEASVRSLLAYAHRLSYSSAAPLGYQPGQQLYFFKPPAPQEAEMRASQLHAFAREWEERQQAREAQRLAAARGVAAPAAPAAAAAPAAAAAAAAPPSAGDLGALAAQHGLDVKQLLASMPAGWKPGDPIPLGPAAAAGGAAVAAAPAGAAAAAVLPVAVAQQQPQQQAVPAAVPVAAQRDVSPEAAAPPAAPRLAGLFLNELNFEEYDYVSEDEEEDSSEEDSDEEFVDDEVDMCQTNAVIEGVDDLANQFFLKAVMNKVGPAAKENYLGQHWLPQSARASATRGAHAYFLSRLLGESSSGWFVESGMTVADILVAVVVEMHLRLYPRQRLEQQLPNLLELYDAVLAQPRIQAYRSSEQHLPSFAPMLP
Length1529
PositionMiddle
OrganismChlorella sorokiniana (Freshwater green alga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Trebouxiophyceae> Chlorellales> Chlorellaceae> Chlorella clade> Chlorella.
Aromaticity0.05
Grand average of hydropathy-0.528
Instability index72.04
Isoelectric point6.06
Molecular weight161024.93
Publications
PubMed=29178410

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19619
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.66|      15|      15|     195|     209|       1
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  205-  220 (26.88/ 8.99)	QQQQQqQQQQQQQQQQ
  350-  364 (25.35/ 7.93)	PSQQQ.QQQQQQQSSP
  618-  632 (24.43/ 7.30)	AAEQQ.QQQQQQQQGT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.60|      17|      19|    1071|    1088|       7
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 1071- 1088 (24.75/17.78)	AGGSGdESSQLADVLGKL
 1093- 1109 (29.84/16.67)	AKGGG.EADGLDDLLEQL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.19|      16|      17|     920|     936|       9
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  920-  936 (25.13/17.84)	AAGAVLPAGGLRvAWKH
  938-  953 (26.06/13.71)	AADATIPPDQLE.ELKR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     503.01|      85|     160|     365|     449|      11
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  106-  149 (55.50/11.98)	...........................................G..GPDSA.ASSP.G...K.................HT...........................................QQ......P...GSPPALLTQLCS...........PA..GSPSQLLQFGRLR
  150-  204 (67.83/16.61)	INSAPTSPQ....LSPRPQVQ...............................SASPaA...QHC...raS......PPG.G...........................................KP......P...ASQ.....LVTSL...........W..QQQQQQQQQQ...
  221-  324 (56.03/12.18)	QQQQQQQQQH.........................................aAASP.V...PLLapdseD......EDWCIpaspavcaqdgapsapaliplsssfgspqppsqqqpnqatplsQQ......P...ADAAG..H.......QAAAAAATPA..S.PFRSSQERREE
  329-  426 (115.71/34.60)	SEMAEAGADEWsSQEAEA......phppsqqqqqqqqqqsspRG..AGSLV.AAGP.G...QLC.....N......QQGCS...........................................QQ......P...ASQQGGVHLVCSLTSQEASEVADPW..SQPEDDDEEQRRR
  427-  510 (77.09/20.09)	QQQAEEERQHW.ALEAAALLQQQQ.........gaeqqlmdvREsfAAQRE.AFDA.A...DWH.....N......RRWMP.........................................llPQ......PtvvASQIPAEELL.PMSGSAAAAAA..................
  511-  593 (85.84/23.38)	QQAAASSSSGG.A.QASGRSRGHP..................GG..GQEAD.SAAA.GaapQLA.....AdflsrfRQGAL...........................................PP......P...DS..SG....YNMAPLE......PLlkRQREEAEAEQARQ
 1178- 1228 (45.00/ 8.03)	.....................................................SSA.A...PLG.....Y......QPG.............................................QQlyffkpP...APQEAE......MRASQLHAFAREW..EERQQAREAQRL.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.69|      37|     173|    1246|    1283|      12
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  666-  708 (51.91/15.64)	AAAAAAAGQEQHQEaVRAFCVERrgrsGAYYRTFTaASYPAVW
 1247- 1283 (67.78/27.13)	AAAAAAAAPPSAGD.LGALAAQH....GLDVKQLL.ASMPAGW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.29|      15|      19|      28|      45|      15
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   28-   45 (20.74/19.57)	PAGAKG.........RRSKPHpLygPA
   52-   75 (20.55/ 6.97)	SGGGSGgggtsqnaaRRSKSQ.L..PS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.94|      38|     173|     828|     869|      16
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  819-  834 (16.42/ 6.58)	..........................GGELQ..VVRGEA.....EGRPQ
  837-  869 (56.41/33.82)	PLVDMAVYSK.....NRHWRMSFCCKGGKAA..VLRPTAR.........
  960- 1008 (51.11/26.68)	PFIERAATHRaggapARARTLAFCGSGATVAysMIGPGSHycenMGRPH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.78|      22|     152|     890|     911|      17
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  890-  911 (42.95/19.41)	CNVSPSARLLQMP.NPLPMAGGG
 1028- 1045 (31.02/11.56)	CHDPDCARFRSGW.MPLPR....
 1048- 1065 (29.81/10.76)	CLPEPPS.....PaGPAPSGSGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.45|      10|      30|     759|     768|      19
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  759-  768 (17.80/11.43)	HVAAQLRRHF
  783-  792 (17.65/11.25)	STPAKFSRHL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19619 with Med4 domain of Kingdom Viridiplantae
Unable to open file!