<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19616

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMVADPTALLATVAQAQQQLAQLEATAKGLIDELAASGGTGATPRLRELLANGERLVASVAQAGQQLGSVLPPSSAALPPAPDAAAVEAVWAQHAQQDRGAALLSTPVTRPAPSLAELQYSLAYLPSCRLQLLQGRQPTDSPAHATAMLLRCGRAFAAVVHLQQPGSLQPLRVGVLSAAEADTATSGGGSSGSTISLWAPSQHEVYRQLSAQAAAALQHFLAQQQQQQQAGSMGAASPLELLLLWLVTCSDVFTRPSTSSGTLLLADPAAVGGGLLPPLHRPWQLGWDQLWQAALNPRLRQAEHVGATES
Length309
PositionTail
OrganismChlorella sorokiniana (Freshwater green alga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Trebouxiophyceae> Chlorellales> Chlorellaceae> Chlorella clade> Chlorella.
Aromaticity0.04
Grand average of hydropathy0.034
Instability index47.79
Isoelectric point5.95
Molecular weight32021.90
Publications
PubMed=29178410

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19616
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     141.32|      29|      30|      56|      84|       1
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   10-   40 (28.85/ 8.40)	.ATV.AQA.......Q.........QQ.LAQLEATAKGlidELAAS.GGTG
   56-   84 (50.40/19.74)	VASV.AQA.......G.........QQ.LGSVLPPSSA...ALPPA.PDAA
   86-  115 (33.43/10.81)	VEAVwAQH.......A.........QQdRGAAL.LSTP...VTRPA.PSLA
  138-  183 (28.64/ 8.29)	TDSP.AHAtamllrcGrafaavvhlQQ.PGSLQPLRVG...VLSAAeADTA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19616 with Med27 domain of Kingdom Viridiplantae
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