<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19612

Description "Putative fibrillarin, S-adenosyl-L-methionine-dependent methyltransferase"
SequenceMAPPRGRGGSGGFRGGGRSDGGRGRGGGRGFGDRSNSGFKPSGGRGDRGGRGRGDRGRGRGRGGRGGMKGGTKVVVEPHRHAGVFLAKGKEDALVTKNMVPGEAVYNEKRISVQQEDGTKVEYRIWNPFRSKLAAAILGGVDEIWIKPGARVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDCTVPAEVVFQSEVKKLQAEQFKPFEQVTLEPFERDHACVIGGYRMPKKSKATA
Length312
PositionUnknown
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.07
Grand average of hydropathy-0.420
Instability index30.82
Isoelectric point10.12
Molecular weight33392.75
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19612
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.57|      25|      34|       8|      41|       1
---------------------------------------------------------------------------
    8-   40 (44.82/24.76)	GGSGGfRGG.GRSDGGRGRG.GGRGfgdrsnsGFK
   43-   69 (47.75/11.76)	GGRGD.RGGrGRGDRGRGRGrGGRG.......GMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.51|      58|     159|      82|     140|       2
---------------------------------------------------------------------------
   82-  140 (94.04/75.24)	AGVFLAKGKEDALVTKN.....MVPGEAVYNEKRISVQQEDGTKVEYRIWNPFRsKLAAAILGG
  239-  301 (93.48/69.81)	ASYFLKAGGHFVISIKAncidcTVPAEVVFQSEVKKLQAEQFKPFEQVTLEPFE.RDHACVIGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19612 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAPPRGRGGSGGFRGGGRSDGGRGRGGGRGFGDRSNSGFKPSGGRGDRGGRGRGDRGRGRGRGGRGGMKGGTKVV
1
75










Molecular Recognition Features






MoRF SequenceStartStop




1) MAPPRGRGGSGGFRGGGRSDGGRGRGGGRGFGDRSNSGFKPSG
1
43