<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19610

Description Uncharacterized protein
SequenceMDRSEILEAENNLTLQTHSPLSIVAIAINGNRKSKYIVKWALEKFIPEGNLFFKLIHVRARITGIPTPMGNLIPISEVREDVVAAYRKDMEWQTSELLLPYKKMCTLKKVQVDVVVIESDNVANAIAEEVSKSAISNLVIGAPSRGLFTRKQKGLSPKISACTPGFCTVYAVSKGKLSSLRPSDSQSVGSIRDDNSDTSSISSSSSNASSSQTGTDRGSVGSYSHFRSPSLPMQRFQALSSMNQNLLNTKAKSNETIHSKHQSLDLGEEKDAMTMNSYPSNSDAGRALSHSSSTLSFVTDNQSWTSDQASTSDVVKNYSSESQVNINLELEKLRIELRHVKGMYAMAQSETIDASRKISNLSNRRLEEAVRLKEISAMEEKAKMLAEQEKENYEAAKIEADYMRQCIESEASQRREAEMKAFHDAKEKEKLENVLVGPVQQYQKFRWEDIVSATSSFSEDLRIGMGAYGTVYKSNFHHTTAAVKVLHSKENHQTKQFLQELEILSKIRHPHLLLLLGACPDHSCLVYEYMENGSLDDRLNQKNNTPPIPWYERFRIAWEVASALVFLHSSKPKPIIHRDLKPANILLDHNLVSKIGDVGLSTMLNLDPSMSSIYNETGPVGTMCYIDPEYQRTGVISPKSDVYALGMVILQLLTAKPAIAITHLVETAIHGKSLKDVLDPKAGSWPMEEARQLAELGLSCAELRRRDRPDLKEQVVPALERLKKVADKARDSASTVQCLPPNHFICPILKDVMNEPCVAADGYTYDRRAIEKWLEENDNSPMTNLAMPNKHLIPNYTLLSAIVEWKSRKQ
Length810
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.06
Grand average of hydropathy-0.426
Instability index44.92
Isoelectric point7.08
Molecular weight90542.06
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19610
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.35|      14|      15|     289|     303|       2
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  289-  303 (20.83/19.18)	SHSSSTlSFVTDNQS
  306-  319 (24.53/16.94)	SDQAST.SDVVKNYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.79|      15|     108|     438|     453|       3
---------------------------------------------------------------------------
  438-  453 (26.00/28.86)	PVQQYQKFR..WEdIVSA
  547-  563 (27.79/23.45)	PIPWYERFRiaWE.VASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.36|      19|     348|     159|     177|       4
---------------------------------------------------------------------------
  159-  177 (35.61/25.74)	ISACTPGFCTVYA.VSKGKL
  516-  535 (32.75/23.09)	LGACPDHSCLVYEyMENGSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     391.60|     131|     644|       5|     147|       6
---------------------------------------------------------------------------
    5-  147 (183.43/171.68)	EILEAENNLTLqTHsplsIVAIAINGnRKSKYIV.....KWALEKFIPEGNLFFKLIHVRARitGIPTPMGNLIPISEvREDVVAAYRKDMEwQTSELLLPYKKMCTLKKVQVDVVVIESDNVA...NAIA...EEVSKSAISNLVIgaPSRGL
  651-  792 (208.17/148.03)	QLLTAKPAIAI.TH....LVETAIHG.KSLKDVLdpkagSWPMEEARQLAELGLSCAELRRR..DRPDLKEQVVPALE.RLKKVADKARDSA.STVQCLPPNHFICPILKDVMNEPCVAADGYTydrRAIEkwlEENDNSPMTNLAM..PNKHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.54|      13|      30|     178|     190|       8
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  178-  190 (23.63/14.78)	SSLRPSDSQSVGS
  210-  222 (23.91/15.04)	SSQTGTDRGSVGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19610 with Med32 domain of Kingdom Viridiplantae
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