<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19604

Description Uncharacterized protein
SequenceMAVVSSVPAKMRPTEPIRYPDISDMGSFGEIVVEPVARVIQDMIYVTVGTPVKESKLNLIWTLHNSGGKRVCIVHVLQPAQMIPTSLGTKFPASQVNPQEVRAYREKERQDMQKLLDDYLRICRAMGVRAEKLHIEKDSIEKGIVELISQHGIRRLVMGAAADKSHSRKMTDLKSKKAIYVREHAPVFCRIQFVCKGYLIHTREASSDAVDAQFTLLPPRPSTDTEQSPHHLRSQSSVTLGQNNRPSLSNPAQDLLCRVRSTKSGKYGGIATDVAEGLSTPSSSRLEAEGSADEWDQASRRSTSGYSSCSSALGDLPLIQFERTEGSENGSRNSSALTHLKDINRSSPPSVLDGNVNDTLYDHLEQAMTEAENAKREAFEEAIRRGKAEKDAIDAIRRAKASEFLYNEELRQRKEIEDTVAREREELEKMKKQRDEVMEEFRAAVEQRSQLESQIAESDQLVQCLEQKIISAVDLLQNYKRERDELHVERDNALREAEELRKRQGEASSTQMPQFFSDFSFPEIEEATRNFDPSLKIGEGGYGSIFKGFLRHTEVAIKMLNAHSLQGPSEFQQEVDILSKLRHTNLVTLIGACPEGWTLIYEYLPNGSLEDRLSCKDNTPPLSWQARIRIATELCSVLIFLHSSKPHGVVHGDLKPSNILLDANFVCKLSDFGISRLLSRGQGSSNNTTLCCWTGPKGTFAYMDPEFLSSGELTPKSDVYSFGIILLRLLTGKPALGITKEVQYALDSGKLETLLDPLVGDWPFVQAEQLARLALRCCEMSRKCRADLVSDVWRVLEPMRASCGSLSSFRLGTEEHFQPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNQKLEHKNLVPNHALRSAIQEWLQHH
Length889
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.06
Grand average of hydropathy-0.467
Instability index48.42
Isoelectric point5.99
Molecular weight99742.84
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19604
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.48|      22|     300|     495|     550|       1
---------------------------------------------------------------------------
  494-  516 (34.01/68.45)	LREAeELRKRQGEASSTQMPQFF
  550-  571 (38.48/ 8.10)	LRHT.EVAIKMLNAHSLQGPSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.45|      35|     299|     104|     150|       3
---------------------------------------------------------------------------
  104-  141 (53.09/33.90)	YREKERQDMQKLLDDYLRICRAmgvRAEKLHIEKDSIE
  406-  438 (50.39/23.89)	YNEELRQ..RKEIEDTVARERE...ELEKMKKQRDEVM
  464-  491 (37.97/24.48)	CLEQKIISAVDLLQNYKR.......ERDELHVERD...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.26|      67|     465|     193|     334|       6
---------------------------------------------------------------------------
  215-  288 (108.85/167.94)	TLLPPRPSTDT...EQSPH.HLRSQSSVtlgQNNRPSLSNPAQ....DLLCRVR.STKSGKYGGiatdVAEGLSTPSSSRLEA
  588-  663 (105.41/39.33)	TLIGACPEGWTliyEYLPNgSLEDRLSC...KDNTPPLSWQARiriaTELCSVLiFLHSSKPHG....VVHGDLKPSNILLDA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19604 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGIATDVAEGLSTPSSSRLEAEGSADEWDQASRRSTS
2) PLIQFERTEGSENGSRNSSALTHLKDINRSSPPSVLDGNVNDTLYDHLEQAMTEAENAKREAFEEAIR
3) VDAQFTLLPPRPSTDTEQSPHHLRSQSSVTLGQNNRPS
268
317
210
304
384
247










Molecular Recognition Features






MoRF SequenceStartStop




NANANA