<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19596

Description Putative transcription regulator IWS1 family
SequenceMATTAKSGSSLNYWRNYFRTANSDIFGIIDHAIMVAAVDCPKEFRLRRDRVAELLFSCRMSRCSGCEKVELVVPGGHGHGHDDHYEVEHDDDDDDDDRGGDRDFEAGASKESKVNSSRDDQIGEMSMKNDQDSNYSYGLAEALTDEIEQESQVFGEVLRIKGIFQNSEHESDAVLFESLRKLELMALSVETLKATEIGKAVNRLRKHGSMKIRNLVRTLIDGWKVMVDEWVNATTAIASGGTEVISDSVDPSIDDDFEEGLPTPPLDEGAFFATQTTSMELSEFFDGMEDYGNPRNSGQYTRNRENGRKPSLEKQNVVKQEQQYVSDQGNVLPKKIKSEPVMVKQEVDVKPNRPSNTNSGPRRPPKVSMERKGVSSVTNIEQRTDKVSIQKRQLTGQQQDKYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTVQVMELHDLPKQGLGHRNPHLKPGNHNRHRAHGRRL
Length472
PositionUnknown
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.06
Grand average of hydropathy-0.892
Instability index36.99
Isoelectric point5.86
Molecular weight53265.68
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19596
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.36|      22|      22|     299|     320|       1
---------------------------------------------------------------------------
  299-  320 (37.69/25.14)	QYTRNRENGRKPSLEKQNV.VKQ
  323-  345 (32.67/20.86)	QYVSDQGNVLPKKIKSEPVmVKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.19|      18|      26|     391|     412|       3
---------------------------------------------------------------------------
  391-  412 (26.21/24.95)	KRQLtgqqQDKYKCSDEV....AVQV
  418-  439 (24.98/13.51)	KRKL....QESYQQAENAkkqrTVQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.47|      14|      26|     256|     269|       5
---------------------------------------------------------------------------
  256-  269 (26.39/15.61)	DFEEGLPT..PPLDEG
  283-  298 (22.08/11.93)	EFFDGMEDygNPRNSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19596 with Med26 domain of Kingdom Viridiplantae
Unable to open file!