<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19593

Description Uncharacterized protein
SequenceMEHQYSGGGGGGGSGSWNMIPSVPTHSNPSTPSSQDHLYLQQHQQQFQQQQQQQRLLLQQQQQQQQQQQQQQQQQQQQQQHQSLASHFHLFHLVEKLSDSIENGTRDQQSDALVADLNNHFDKCQQLLNSISGSITTKAMTVEGQKKKLEESEQLLNQRRDLNNKYKNSVVDLLKSEP
Length178
PositionMiddle
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-1.244
Instability index73.31
Isoelectric point6.28
Molecular weight20379.99
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19593
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.40|      15|      19|      37|      55|       1
---------------------------------------------------------------------------
   40-   54 (33.26/ 9.51)	LQQHQQQFQQQQQQQ
   58-   72 (31.14/ 6.15)	LQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.76|      28|      43|     103|     130|       2
---------------------------------------------------------------------------
   73-  100 (27.35/ 8.52)	...QQQQQQQQHQSLASHfhlFHLVEKLSDS
  103-  130 (46.79/18.95)	NGTRDQQSDALVADLNNH...FDKCQQLLNS
  132-  157 (30.61/10.27)	SGSITTKA.MTVEGQKKK...LEESEQLLN.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19593 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEHQYSGGGGGGGSGSWNMIPSVPTHSNPSTPSSQDHLYLQQHQQ
2) QQQQRLLLQQQQQQQQQQQQQQQQQQQQQQHQSLA
1
51
45
85










Molecular Recognition Features






MoRF SequenceStartStop




1) GSWNMIPSVPTHSN
15
28