<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19587

Description Putative transcription regulator IWS1 family
SequenceMDYDDLRTIVHTSGVDVFTFIDAAIAVAAVDEDSELRRRRDGIVERLYGATCAPPLPPPRCQNCDGDGMNANQQPKGVSPATPQSVDNRDEEDEEEEEELDPCAGLFDDEPKKILDIKKQLEDPDQSEDSLVELLQSLVDMDISFQDLKDTDIGRQVSQLRKQHQGEVVRKLAKQLVRKWKGIVDEWVKLHGEEPTNSVMVDGDSPQQKIHLNGHHQVPDFGYSPNPHNGSSGSDKNNSEPERKPKLIPRREVPPKPIQSVSAAQNRQREQRERNFDADDKLASARKRLQANYKEAENAKRQRTIQVMDIHEIPKPKNSFIAKNKGGGGSGSHQGRHW
Length338
PositionUnknown
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-1.036
Instability index52.10
Isoelectric point5.41
Molecular weight38051.75
Publications









Function






Annotated function


GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19587
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     151.26|      28|      29|     242|     269|       1
---------------------------------------------------------------------------
  207-  238 (38.75/19.68)	QQKIHLNGHHQVPdfgysPNP.H.NGSSGSDKNN
  242-  269 (45.55/24.23)	ERKPKLIPRREVP.....PKPIQ.SVSAAQNRQR
  273-  301 (33.26/16.00)	ERNFDADDKLASA.....RKRLQaNYKEAENAKR
  302-  325 (33.70/16.30)	QRTIQVMDIHEI......PKPKN.SF.IAKNK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.88|      34|      35|     106|     139|       2
---------------------------------------------------------------------------
   72-  104 (40.71/21.44)	.....NQQPKGVSPATPQsVDN.RDEEDEEEE.EELDPCA
  106-  139 (52.47/29.68)	L...FDDEPKKILDIKKQ.LED.PDQSEDSLV.ELLQSLV
  141-  177 (35.70/17.93)	MdisFQD..LKDTDIGRQ.VSQlRKQHQGEVVrKLAKQLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19587 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HGEEPTNSVMVDGDSPQQKIHLNGHHQVPDFGYSPNPHNGSSGSDKNNSEPERKPKLIPRREVPPKPIQSVSAAQNRQREQRERNFDADDKLASARKRLQANYKEAENAKRQRTIQVMDIHEIPKPKNSFIAKNKGGGGSGSHQGRHW
2) PPLPPPRCQNCDGDGMNANQQPKGVSPATPQSVDNRDEEDEEEEEELDPCAG
191
54
338
105










Molecular Recognition Features






MoRF SequenceStartStop




1) KKILDIKKQLE
2) LIPRR
3) NSFIAKNKG
4) SHQGRHW
112
247
318
332
122
251
326
338