<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19584

Description Uncharacterized protein
SequenceMTSVAVAVNGGDGNGSRRAVKWAVENLMPTADRFVLVHVMPRITSIPTPSGDRIPVTELDEGVVATYVNDMKDKYEEVFTPLKKLCKSKKVETLVLEDEVPANGILSFISQSDINCLVLGSSNSNYITRKLKGPDVPTVVLKCAPESCDIHVVSKQRVITKSASLSSACESSTANGLSTRGEDGGFSRDINEGITGSRSSYLVSTVNEGYGAPSMSDLSYISSEAFTRMKFPANASVDQERNHQNLEENLEIISFQRGSSSISSNIEQIEVEKLRAELQNTLGMYKRACEELVHAQSKVQLLSSECLEEARRVNAALESEETLRKIAAEEAAKHFKARKEIEEAKVLLAKEAYERQVAELNALKESTGKKEFVDALFSCDNRYRRYSRKEIEIATNFFSETNVIGEGGYGKVYKCSLDQTPVAVKVLRPDAVEKKEEFLKEVEILSQLHHPNIVLLLGACPEIGCLVYEYLENGNLEDYISHRQNGKPSLPWTVRFRIIFEIACGLAFLHNSKTDPIVHRDLKPGNVLLDRNYSSKIGDVGLAKLITDIVPDNITEYRESIIAGTLFYMDPEYQRTGTIRPKSDLYAFGVIILQVLTARHPNRLIYIVENAIANGSFADFLDESVTDWPLDETEELAQLALRCSKLRCRDRPDLETEVLPVLKRLVDIADPTSKIERNHIDAPSHYYCPILQEIMDDPHISADGFTYEYRAIKAWLDKHNVSPVTRLRLQHSELIPNHTLRSAIQEWRSHVTYSSALVDRRVNRTSSCKLSKAESTY
Length777
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.07
Grand average of hydropathy-0.334
Instability index48.32
Isoelectric point5.72
Molecular weight87064.77
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19584
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.36|      14|      20|     308|     321|       1
---------------------------------------------------------------------------
  308-  321 (22.12/15.72)	EEARRVNAALESEE
  330-  343 (23.24/16.90)	EAAKHFKARKEIEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.12|      49|     140|      51|     155|       2
---------------------------------------------------------------------------
   82-  137 (71.78/131.91)	LKKLCKSKKVETLVLEDEvpaNGILSfisqSDINCLVLGSSNSNYITRKLKGPDVP
  165-  213 (84.33/34.44)	LSSACESSTANGLSTRGE...DGGFS....RDINEGITGSRSSYLVSTVNEGYGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.66|      14|      15|     240|     253|       8
---------------------------------------------------------------------------
  240-  253 (23.24/15.78)	ERNHQNLEENLEII
  256-  269 (22.42/14.96)	QRGSSSISSNIEQI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19584 with Med32 domain of Kingdom Viridiplantae
Unable to open file!