<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19577

Description "Putative WW domain, FF domain-containing protein"
SequenceMASPAWLPQDVQPSVSQAPVSGSPAGAPSTPTAAPLASSAGTPSFSYSVPPNANITFGTSQQPSTSPGTKFNLSASPMVIQPPVPGLSSAASPSFSYNIPKSNYPFPNNQLFQSGMNVSPAIAQETGNASLSSTSSHSGYLAASTSSSSTMVLSSAPNVGPTTSWVPTTPSFNMTHGMPGTPGPPGTAHSLQMSFNLTARSAPVDSSSIALRPSLQTPSAGSSAVLPQAGAPYPSLPAMAANPHGVWLQSPQMEGIPRSPFQAYPAAFPGPFPLPTRVMPPPSVLIPDSQPPGVTPVGNTVATSLSSSSGHQLAPSSWMQTELPHPGIDDRKHALEAGNQHIAAVNQQLDAWTAHKTETGVVYYYNAVTGESTYEKPPGFKEEPDKVSVQPVPVSTVNLSGTDWVLVTTSDGKKFYHNSKTKVSSWQIPNEVIEMRKKQDGDTPKEHPESVPNNSQMVEKESAPISLSAPAISTGGREAMAYKASTVQGSSSALDLIKKKLQDSGAPVTSSPVSGPSELNGSRGVESTPKVQQSENSKDKLNDTNGDGNMSDSSSDSEDADSGPTKEEGIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSRRALFEHYVKTRAEEERKEKRAAQKAAIEAFKQLLDEAVEDIDDTTDYHSFRKKWGNDPRFENLDRKDREHLLNERVLPLKKAAEEKAEAVRAAAATSFKCMLQEKGDITVNSRWSRVKDSLRNDPRYKSVKHEDREVLFNKYISDLKAVEEEAEREAKAKRDEQDKLRERERELRKRKEREEQETERVRLKVRRKEAVSSFQALLVETIKDPQASWTESKPKLEKDPQRRAANPDLNSSDMEKLFRDHIKMLHERCAHEFRALLAEVLTTEAASQETEDGKTVLNSWSTAKRFLKSDPRYNKMPRKDREVVWHRYAEEMLRKQMSSLDHREDRKSDAKSRSSADAGRTTFGSRGAHDRR
Length968
PositionUnknown
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.06
Grand average of hydropathy-0.770
Instability index57.58
Isoelectric point8.32
Molecular weight106151.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19577
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     435.34|      65|      65|     625|     689|       1
---------------------------------------------------------------------------
  570-  621 (52.98/27.09)	.............IIQFKEMLKE..RGV......APF.SKWEKelpkivfDP..RFKA..IPSYSRR...ALFEHYVKTRA
  625-  689 (105.76/61.18)	RKEKRA..AQKAAIEAFKQLLDEAVEDIDDTTDYHSFRKKWGN.......DP..RFEN..LDRKDRE...HLLNERVLPLK
  693-  756 (94.53/53.93)	EEKAEA..VRAAAATSFKCMLQEK.GDITVNSRWSRVKDSLRN.......DP..RYKS..VKHEDRE...VLFNKYISDLK
  761-  800 (52.71/26.92)	EAEREA..KAK..............RDEQD.....KLRER...........E..R.EL..RKRKERE...EQETERV.RLK
  803-  862 (63.67/34.00)	.........RKEAVSSFQALLVETIK..DPQASWTESKPKLEK.......DPqrRAANpdLNSSDME...KLFRDHIKMLH
  866-  929 (65.69/35.30)	AHEFRAllAEVLTTEAASQETEDGKTVLNSWSTAKRFLK...S.......DP..RYNK..MPRKDREvvwHRYAEEML...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     273.18|      46|      47|      12|      57|       2
---------------------------------------------------------------------------
   12-   47 (58.01/19.33)	..........................QPSV....SQAP...V.SGSPAGAPS..TPTAAPLA..SSAGTPSFSY
   48-   97 (59.11/19.82)	SVPPNA....NITF........gtsqQPST....SPGTkfnL.SASPM.VIQ..PP..VPGL..SSAASPSFSY
   98-  149 (37.56/10.19)	NI.PKS....NYPFpnnqlfqsgmnvSPAI....AQE......TGNASLSST..SSHSGYLA..ASTSSSS...
  153-  183 (29.50/ 6.59)	.............................L....SSAP..nV.GPTTSWVPT..TPSFNMTH..GMPGTPG...
  184-  233 (32.24/ 7.81)	..PPGTahslQMSF................nltaRSAP...VdSSSIALRPSlqTPSAGSSAvlPQAGAP...Y
  235-  284 (56.76/18.77)	SLPAMA....ANPH....gvwlqspqMEGI....PRSP...F.QAYPAAFPG...PF..PLP..TRVMPPP.SV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     373.77|      99|     117|     354|     452|       3
---------------------------------------------------------------------------
  287-  346 (66.77/32.54)	..................................PDS...QPPGVTPVgNTVATS...LSSSSGHQLAP......SSWmqtELPHPGIDDRKHA.LEAGNQHIAAVN
  354-  452 (174.57/97.95)	AHKTETG....VVYYYNAVTGESTYEKPPGFKEEPDKVSVQPVPVSTV.NLSGTDWVLVTTSDGKKFYHNSKTKVSSW...QIPNEVIEMRKKQDGDTPKEHPESVP
  469-  564 (132.43/72.38)	APAISTGgreaMAYKASTVQGSSSALDLIKKKLQDSGAPVTSSPVSGPsELNGSRGVESTPKVQQS..ENSKDKL.........NDTNGDGNMSDSSSDSEDADSGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19577 with Med35 domain of Kingdom Viridiplantae
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