<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19576

Description "Putative mediator complex, subunit Med23"
SequenceMDQNQRSSSASASRAYQFHPARAAIVNLFDLYLGGKSSSRQKSEDSNREPPNKSQKRVLALNRELPPRNEQFILDFEQLQSQFPDQDQLRVVTESVLISLVVQCSNHAPRAEFLLFALRSLCTIGHINWDSFLPSLLSSVSTAEMSMGQGSQAMTGISSQSSMLPSSNAIPNASNFQSSNPASPLPSVHGIGSPSQTAIEPMTLSPAKSSDMSSNGQQAAARANSSIRDNAISSLRQLCCKIILTGLEFNLKPATHADIFSHMLNWLVNWDQKQLGADESDGIKSWRPGKALIEWLHSCLDVIWLLVDEDKCRVPFYELLRSGLQFMENIPDDEALFTLILEIHRRRDMMAMHMKMLDQHLHCPTFGTHRIFSQTTPSISGEAVASLRYSPITYPSVLGEPLHGEDLAISIPKGSLDWERALRCIRHAICTTPSPDWWKRVLLVAPCYRGPSQGPTPGAVFTSEMICEATIDRIVELLKLTNSDVNCWQDWLVFSDIFFFLIKSGCVDFVYFVDKLVSRLTESDPHILKTNHVTWLLAQIIRVELVINALNSDARKVETTRKILSLHKEDRSSDPNSPQSILLDFISSCQNLRIWSLNTTTREYLNNEQLQKGKQIDEWWRHASKGDRIMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLTSAGVAESLPATNLQSNERLMVMREVNPLPMSLLSGFAINLCLKLAYQMEESLFCGQVVPNIAMAETYCRLLLIAPHSLFRSHFNHLAQRSPSVLSKPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISALKAKRGDHRVFRLAENLCMNLILSLRDFFLVKREGKGPTEFTETLNRVTVVTLAIIIKTRGIADADHLHYLQTMLEQILVSSNHTWSEKTLRYFPSLLRDFLIPRIDNRGIAIQAWQQAETTVINQCNQLLSSSADPTYVMTYISHSFPQHRQYLCAGAWILMQGRPENINSVNLARVLREFSPEEVTANIYMMVDVLLHNIQLEHQRGHSLQDLLVKACANLTFFIWTHELLPLDIMLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCMNRGAPEHWLYPGPFKRVELQTALGNHLSWKDRYPAFFDDIAARLLPVIPLIIYRLIENDAIDSADRVLAMYTQFLAYHPFRFTFVRDILAYFYGLLPPKLIVRILNVLDISKIPLSESFPQHINSSNPVICPPPDYFATLLLGIVNNVIPPLHNNSKSGSASDGLNSSMRAPPNKTPATSQSGQTNASDGQKAFYQIQDPGTYTQLVLETAVIELLSLPVSASQIVSSLVQIVVNIQPTLIQSSNGLHGATNGVGQGSVLPTSPSGGSTDSLGTNRSSPSVSGINVSSFVSRSGYTCQQLSCLLIQACGHLLAQLPPDFHKQLYMEASRIIKETWWLSDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPLEWLEGTHLIVKHLRPVTSVAMLRIAFRIMAPLLPKLANAHNLFNKTLSLIFNMMADVFGKNAQPSTPVEPLEVTDLIDFFHHIVHYEGQGGPVQAPSKPRPEVLVLCGRAAESLRPEIQHLLSHLKPDTNSSIYAATHPKLAQNTS
Length1602
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.08
Grand average of hydropathy-0.074
Instability index48.07
Isoelectric point6.70
Molecular weight179401.14
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19576
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.37|      48|     181|    1071|    1127|       1
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 1078- 1125 (88.42/57.98)	WLYPGPFKRVELQTALGNHL...SWKDR.............YPAFFDDIAARLLPVIPLIIYRL
 1406- 1469 (71.95/30.04)	WLSDGKRSLGELDSAVGYALldpTWAAQdntstaignivalLHSFFSNLPLEWLEGTHLIVKHL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.49|      15|      16|     100|     114|       2
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  100-  114 (27.02/17.32)	LVVQCS.NHAPRAEFL
  118-  133 (24.47/14.92)	LRSLCTiGHINWDSFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.55|      24|     181|     807|     853|       3
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  815-  853 (28.72/60.52)	CMNLilslrDFFLvkregkgpteFTETLNRVTVVTLAII
 1017- 1040 (44.83/22.85)	CANL.....TFFI..........WTHELLPLDIMLLALI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     155.87|      74|     181|       7|      88|       4
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    7-   57 (49.66/40.61)	........................................................................................................................................SSSASASRAYQFHPARAAivnlfDLYLGGKSSSrQKSEDSNREPPNKSQKR
   58-   88 (23.99/12.64)	VL.ALNRELPPRNEQFIldFEQLQSQFPDQDQ...........................................................................................................................................................
  193-  237 (55.43/29.93)	................................lrvvtesvlislvvqcsnhapraefllfalrslctighinwdsflpsllssvstaemsmgqgsqamtgissqssmlpssnaipnasnfqssnpasplpsvhgigSPSQTAIEPMTLSPAKSS.....DMSSNGQQAA.ARANSSIRDNAISSLRQ
  243-  272 (26.79/ 8.77)	ILtGLEFNLKPATHADI..FSHMLNWLVNWDQ...........................................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     242.15|      69|     324|     868|     936|       6
---------------------------------------------------------------------------
  868-  936 (121.70/77.75)	LQTMLEQILVSS..NHTWSEKTLRYFPSLLRDF...LIPRIDN.R...GIA...IQAWQQA...ETTVINQCNQLLSSSA........DP.TY
 1140- 1181 (35.64/16.85)	...MYTQFLAYHpfRFTFVRDILAYFYGLLPPK...LIVRILNvL...DIS..........................................
 1185- 1273 (84.81/51.64)	LSESFPQHINSS..NPVICPPP.DYFATLLLGIvnnVIPPLHN.NsksGSAsdgLNSSMRAppnKTPATSQSGQTNASDGqkafyqiqDPgTY
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.65|      77|     782|     685|     767|      10
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  686-  767 (122.06/102.25)	REVNPLPM.........SLLSGFA.....INLCLKLAYQMEESLFcGQvvpNiAMAETYCRLLLIAPHSLFRSHFNHL.AQRSP.SVLSKPGVTLLVL
 1470- 1562 (116.59/74.96)	RPVTSVAMlriafrimaPLLPKLAnahnlFNKTLSLIFNMMADVF.GK...N.AQPSTPVEPLEVTDLIDFFHHIVHYeGQGGPvQAPSKPRPEVLVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19576 with Med23 domain of Kingdom Viridiplantae
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