<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19575

Description "Putative von Willebrand factor, type A"
SequenceMTEKQLIVVVEGTAAIGPYWSAVVSDYVEKIIRSFSGNELSGQKPSTSIVEMSLVTFNTHGSYSGCLVQRSGWTRDVDRFLQWLSAIPLAGGGFSDAAIAEGLSEALMMFTNIQNGSQNQQNVDFQKHCILVAASNPHPLPTPVYRPQIQNVEKSENIDAQTESRLYDAEAVAKSFAQCLVSLSVICPKQLPKLRAIYNAGKRNPRAADPPIDNVKNPHFLVLISENFMEARATLSRPGSTTLPSNPSTVKMDIAPVASVTGPPPTSMPSVNGSVMNRPSVSVNNVPPATVKVEPSTVSSMVAGPPFAHVPSVRPPSQGVPTLQTSSPSSGEMITNNESVPDLKPIVSNVTHQLRPVGSILNNISQARVMNSAALSGGSSIGLQNMGQNPMAMHVSNMISSGMASSVAATQNVFSSSGPHTLAQVAQSTGLSSFTSGTSNVSGNSNLGMSQPMSNLQGGVSIGQSVPGMSQGNLSGPQMVQSGIGMTPNMMSGLGSSGTSSGTGTMIPTPGMSQQAQSGMQSLGANNSSVSNVPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSATASETLAANWPPTMQIVRLISQDHMNNKQYVGRADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQVGGQQQQMQQMQQQQPQLQQMQQQQPQLQQQQQPQLQQQQHPQMQQQQQQPQLQQQQHPQMQQQQQHPQMQQQQQQQHPQMQQQQQQLPQMQQQQQHPQMQQQQLSQLQSQQQIPQLQQLQQQHQQQQLVGGGMGQAYGQGRSQLLSQGQVSSQQGPNMPGGGFMG
Length837
PositionUnknown
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-0.470
Instability index62.15
Isoelectric point9.13
Molecular weight90278.84
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19575
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.84|      16|      16|     700|     715|       1
---------------------------------------------------------------------------
  682-  699 (31.11/ 7.00)	MQQQQPQLQQmqQQQPQL
  700-  715 (40.35/11.27)	QQQQQPQLQQ..QQHPQM
  717-  732 (40.35/11.27)	QQQQQPQLQQ..QQHPQM
  742-  752 (29.02/ 6.04)	QQQ.....QQ..QQHPQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.42|      22|      27|     263|     288|       2
---------------------------------------------------------------------------
  265-  286 (42.22/19.88)	PTSMPSVN..GSVMNRPSVSVNNV
  390-  413 (28.21/ 8.47)	PMAMHVSNmiSSGMASSVAATQNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.13|      22|      28|     754|     778|       3
---------------------------------------------------------------------------
  754-  778 (40.48/15.61)	QQQQQLPQMQQ.QQQHpqmQQQQL.....SQ
  780-  807 (34.65/ 7.36)	QSQQQIPQLQQlQQQH...QQQQLvgggmGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     121.69|      23|      23|     448|     470|       4
---------------------------------------------------------------------------
  417-  439 (23.36/ 6.48)	..SGPHTLAQVAQ.STGLSsfTSGTS
  448-  470 (44.64/19.87)	GMSQPMSNLQGGV.SIGQS..VPGMS
  473-  487 (25.87/ 8.06)	NLSGP.QMVQSGI..........GMT
  511-  531 (27.82/ 9.29)	GMSQ...QAQSGMqSLGAN..NSSVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.23|      26|      50|     238|     264|       5
---------------------------------------------------------------------------
  238-  264 (44.92/30.49)	PGSTTLP.SNPSTVKMdIAPVAS.VTGPP
  288-  306 (27.25/12.43)	P..ATVK.VEPST.......VSSmVAGPP
  318-  344 (35.06/18.28)	QGVPTLQtSSPSSGEM.ITNNES.VPDLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19575 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATLSRPGSTTLPSNPSTVKMDIAPVASVTGPPPTSMPSVNGSVMNRPSVSVNNVPPATVKVEPSTVSSMVAGPPFAHVPSVRPPSQGVPTLQTSSPSSGEMITNNESVPDLKPIVSN
2) QQHQQQQLVGGGMGQAYGQGRSQLLSQGQVSSQQGPNMPGGGFMG
3) QQQQQPQLQQQQHPQMQQQQQQPQLQQQQHPQMQQQQQHPQMQQQQQQQHPQMQQQQQQLPQMQQQQQHPQMQQQQLSQL
4) QVAQSTGLSSFTSGTSNVSGNSNLGMSQPMSNLQGGVSIGQSVPGMSQGNLSGPQMVQSGIGMTPNMMSGLGSSGTSSGTGTMIPTPGMSQQAQSGMQSLGANNSSVSNVPLSQQT
233
793
700
424
349
837
779
539










Molecular Recognition Features






MoRF SequenceStartStop




NANANA