<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19568

Description "Putative coactivator CBP, KIX domain-containing protein"
SequenceMETSDWRTQLSTDLRGKVVRKLIDILRKRSPPSEDPLSQLKKIQSVAVKFEEKVYMDSSDQKEYMRKVTVKLMAAEGSHPNVAPKSSPNPPCVGLKPSNLVANQGQSIAVQSTDQSQECEVPEQHSLPDVQNNIACAGVSANLAPARTTVSASAQVLPPSQNPYSLKSVGSSSGKGIPFNESANNFKQEQVKQHSSRIDTHPNPHHCRQFKQEYIDPQQNHQQLNPNLYKQVKQEHDAPSCITQQQKVHQQQHHQQKLLKHTIQAPLLRHSELHVSPPSDHRQDQISSFKQTSQSVIKNHHQTAFGQTNPQPTPDIHQKVSSTPEHVFMQSQKQPHVIRSTLTPNNPQQNQLSGQPNGLRDMQQQHHRLPLQHNNLLQEFKGQSIIRSRADHEAQRKNISVRHGSSQLPEGGSSGKRQCEVKMQGETRQTASVLLPKQVQKSQPQNLERQLNSQSQPKMQNLPCSRSMQIAGPASTFGQRISNVDNLQEELYEKVEILKSKYLAELTRVDQKIASHFQKLHSMPQHPETQNIKKLKAIKHMHYTVKFYIMNLNVPKSKITPACKEKLALLEEKIVSFLQIFEQRKPATLLQHGEPSNVHSMPQSVQLHSQAPQGQTCQDEKKLQSQSVNIQCFDTSMQHSNVTNVVNGSDSLSEPPILQHDTVHLPWNLTEQDSEQANSLKLVNQVPSESFKLPKSSPQLPNDMLSQNPALRLESHVNPLESSFSTYQDMHLKWTNEQPDTKTPKQELQRQKSQQQLVQPKQQILQQRHRSPELQSRDLTPNSLPKSLKPSSQQVPQHSSVSEKKNLPMPPMKPKSPVISRGSPEAGISLAPFASAHIPGDSEKPMSETSLVSNAVNIGGQQAQSAPGAIHCSFDGLNAAELPEQPIQRLIKMVNSASCKALSSFASDIGSVVCMTDRMSGPDNVQRSRAAIGDLADMTNFHLQERYFAWQETTVGTRIMKRYRSMPISYEASENSSINDGLSQLSDMENFDLDSPAISYSKRRRLEVNHLFEEIIAINQQLIDTVLDIRDGETIRSVASAPILDGEGTIVRCSFIAVAVASNLKSECVPAPMLAIQPLRLLVPANYPLCSPIFMDKLKVEVSDNQDLSAKVKSKLNFSLRNLTEPLSLGEIARTWDVCARAVISEYAEQNGGGSFSSKYGTWEDCLSAAAA
Length1172
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-0.697
Instability index62.47
Isoelectric point8.82
Molecular weight130787.12
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19568
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     740.64|     116|     117|     221|     336|       1
---------------------------------------------------------------------------
   30-   91 (41.76/13.35)	.................................................................................................................................S......P.PS...EDPLSQLKKI.QSVAVKFEEKV.YMDSS...DQ....KEYMRK...VTvklmaaegSHP............NV..APK..SSPNPP
   99-  218 (125.32/55.76)	NLVANQGQSIA.VQ.STDQS.QECEVPEQ..HSLP.DVQ.....NNI.....ACA.GV...........................................SAN.LA.......P.ARTT........VSasaqvlP.PSQNPYSLKSVGSSSGKGIPFNESANN.FKQEQ..vKQH..SSRIDTH.............PNPH...........HCrqFKQ..EYIDPQ
  221-  336 (200.77/94.05)	HQQLNPNLYKQ.VK.QEHDA.PSCITQQQKVHQQQ.HHQ.....QKL.....LKH.TI...........................................QAPLLR.......H.SELH........VS......P.PSDHRQDQISSFKQTSQSVIKNHHQTA.FGQTN...PQP..TPDIHQK...VS........STPE...........HV..FMQ..SQKQPH
  339-  458 (127.10/56.66)	RSTLTPNNPQQ..N.QLSGQ.PNGL...RDM.QQQ.HHRlplqhNNL.....LQE.FK...........................................GQSIIR.......S.RADHeaqrknisVR......H.GSSQLPEGGSSGKR..QCEVKMQGETR...QTA...SVL..LPKQVQK.............SQPQ...........NL..ERQlnSQSQPK
  459-  587 (104.29/45.09)	MQNLPCSRSMQ.IA.GPASTfGQRISNVDNLQEEL.YEK.....VEI.....LKS.KY...........................................LAELTRvdqkiasHfQKLH........SM......P.QHPETQN.IKKLK.....AIKHMHYTVkFYIMNlnvPKSkiTPACKEK...LA........LLEE...........KIvsFLQifEQRKPA
  616-  739 (45.97/15.48)	TCQDEKKLQSQsVNiQCFDT.S...MQHSNVTNVV.NGS.....DSLseppiLQHdTVhlpwnlteqdseqanslklvnqvpsesfklpksspqlpndmlsQNPALR.........LESH........VN......PlES.............SFSTYQDMH....LKWTN...EQP....................................................
  742-  845 (95.42/40.58)	.........KT.PK.QE........LQRQKSQQQLvQPK.....QQI.....LQQ.RH...........................................RSPELQ.......S.RDL..........T......P.NSLPK.....SLKPSSQQV..PQHSSV.SEKKN....LP..MPPMKPKspvIS.......rGSPEagislapfasaHI..PGD..SEK.P.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.74|      31|      43|     865|     895|       4
---------------------------------------------------------------------------
  856-  893 (48.77/28.42)	VN....iggqqaqSAPGAIHCSFD...GLNAAELPEQPIQRLIKM
  894-  938 (40.98/22.75)	VNsasckalssfaSDIGSVVCMTDrmsGPDNVQRSRAAIGDLADM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19568 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FSTYQDMHLKWTNEQPDTKTPKQELQRQKSQQQLVQPKQQILQQRHRSPELQSRDLTPNSLPKSLKPSSQQVPQHSSVSEKKNLPMPPMKPKSPVISRGSPEAGISLAPFASAHIPGDSEKPMSETSLVSNAVNIGG
2) LLQHGEPSNVHSMPQSVQLHSQAPQGQTCQDEK
3) RKVTVKLMAAEGSHPNVAPKSSPNPPCVGLKPSN
4) RTTVSASAQVLPPSQNPYSLKSVGSSSGKGIPFNESANNFKQEQVKQHSSRIDTHPNPHHCRQFKQEYIDPQQNHQQLNPNLYKQVKQEHDAPSCITQQQKVHQQQHHQQKLLKHTIQAPLLRHSELHVSPPSDHRQDQISSFKQTSQSVIKNHHQTAFGQTNPQPTPDIHQKVSSTPEHVFMQSQKQPHVIRSTLTPNNPQQNQLSGQPNGLRDMQQQHHRLPLQHNNLLQEFKGQSIIRSRADHEAQRKNISVRHGSSQLPEGGSSGKRQCEVKMQGETRQTASVLLPKQVQKSQPQNLERQLNSQSQPKMQNLPCSRSMQ
5) TNVVNGSDSLSEPPILQHDTVHLPWNLTEQDSEQANSLKLVNQVPSESFKLPKSSPQLPNDMLSQNPALRLESHVNPLES
724
589
66
147
643
860
621
99
469
722










Molecular Recognition Features






MoRF SequenceStartStop




1) TQLSTDLRGKVVRKLIDILRKR
8
29