<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19565

Description Uncharacterized protein
SequenceMVNLELFNIVDEIKKVSKAFVVYPKNVNAENAVVLPVMLSSKLLPEMEVEDNAKREQLLLGLQSLPISTQIDKLKARIDMIGAACESAEKVLADTRKAYCIGTRQGIPVVPTLDKAQAAKIQEQENLLRAAVNSGEALRLPPDQRQNPPALPLHLVDVLGGGDGGAQAFPEASGMYSKNTPVSSSNLSGQSPLMQVPGSQLMGRSAASPGGTSITNFDNTTTSPLPYANSPRSGTNIMNTPSPQQQNQQQKQQQQQQQQQQQQQQKMMQLPPQQQLLAQQQFRQSAMQGLGQNPLHQLHDLQGQAQQKFQSLHGQHQMQFSPSMGHQQFQGRQLPSGHVPHGIGQNQLNQGSQMNRHLSQFSGAANSALFNAAQTTPNQMIPNMSATMSSQSLLPRMQFEMPGNNPQRSHASQILSDQMFNMGATNTGGMMPLPQQQQQHGSQGAFGNMAQNAQNLQSNMVALQGTPQNHPNFNQQRQQNQQQ
Length483
PositionHead
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-0.698
Instability index60.27
Isoelectric point9.20
Molecular weight52785.77
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19565
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     278.25|      39|      40|     360|     398|       1
---------------------------------------------------------------------------
  162-  195 (38.26/ 9.91)	...GDGGAQAFPE...............ASGMY.SKNTPVSSSNLSGQS......PLMQ
  197-  229 (35.77/ 8.78)	..PG...SQLMGR...............SAASPgGTSITNFDNTTTSP......LPYAN
  231-  281 (39.75/10.59)	PRSG...TNIMNTpspqqqnqqqkqqqqQQQQQ.QQQQQKMMQLPPQQQL....LAQQQ
  300-  338 (46.79/13.81)	DLQGQAQQKF...................QSLH.GQHQMQFSPSMGHQQFqgrqLPSGH
  360-  398 (64.94/22.10)	QFSGAANSALFNA...............AQTTP.NQMIPNMSATMSSQSL....LPRMQ
  400-  437 (52.75/16.53)	EMPG.NNPQRSHA...............SQILS.DQMF.NMGATNTGGMM...pLPQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.56|      24|      40|      55|      78|       2
---------------------------------------------------------------------------
   55-   78 (39.06/19.98)	REQLLLGL.QSLPISTQIDKLK.ARI
   96-  121 (33.50/16.33)	RKAYCIGTrQGIPVVPTLDKAQaAKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      13|     223|     241|     253|       4
---------------------------------------------------------------------------
  241-  253 (25.40/ 7.94)	PSPQQQNQQQKQQ
  471-  483 (26.30/ 8.49)	PNFNQQRQQNQQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19565 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVNSGEALRLPPDQRQNPPALPLHLVDVLGGGDGGAQAFPEASGMYSKNTPVSSSNLSGQSPLMQVPGSQLMGRSAASPGGTSITNFDNTTTSPLPYANSPRSGTNIMNTPSPQQQNQQQKQQQQQQQQQQQQQQKMMQLPPQQQLLAQQQFRQSAMQGLGQNPLHQLHDLQGQAQQKFQSLHGQHQMQFSPSMGHQQFQGRQLPSGHVPHGIGQNQLNQGSQMNRHLSQFSGAANSALFNAAQTTPNQMIPNMSATMSSQSLLPRMQFEMPGNNPQRSHASQILSDQMFNMGATNTGGMMPLPQQQQQHGSQGAFGNMAQNAQNLQSNMVALQGTPQNHPNFNQQRQQNQQQ
131
483










Molecular Recognition Features






MoRF SequenceStartStop




NANANA