<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19564

Description Uncharacterized protein
SequenceMAAMEGALQNQPPQPLQQQQPQPAAVERLNDAVQQQLNLKSVKDRATNLFKNITRILEDLDGHARTNTTPKWQDLLSQYSMVNLELFNIVDEIKKVSKAFVVYPKNVNAENAVVLPVMLSSKLLPEMEVEDNAKREQLLLGLQSLPISTQIDKLKARIDMIGAACESAEKVLADTRKAYCIGTRQGIPVVPTLDKAQAAKIQEQENLLRAAVNYGEALRLPPDQRQNPPALPMHLVDVLGGGDGGAQAFPEASGMYSKNTPVSSSNLSGQSPLMQVPGSQLLGRSAASPGGTSITNFDNTTTSPLPYANSPRSGTNIMNTPSPQQQNQQQKQQQQQQQQQQQQQQQQKLMQLPPQQQLLAQQQFRQSAMQGLGQNPLHQLHDLQGQAQQKFQSLHGQHQMQFSPSMGHQQFQGRQLPSGHVPHGIGQNQLNPGSQMNRHLSQFSGAANSALFNAAQTTPNQMIPNMSATMSSQSLLPRMQFEMPGNNPQRSHASQILSDQMFNMGATNTGGMMPLQQQHGSQGAFGNMAQNAQNLQSNMVALQGTPQNHPNFNQQRQQNQQQ
Length562
PositionHead
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-0.715
Instability index59.51
Isoelectric point9.10
Molecular weight61749.75
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19564
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.63|      16|      16|     324|     339|       1
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  324-  339 (30.39/ 9.22)	QQQNQQQKQQQQQQQQ
  341-  356 (28.24/ 7.99)	QQQQQQQKLMQLPPQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     190.57|      39|      40|     442|     480|       2
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  373-  409 (50.40/16.48)	..GQNPLH.QLH........................DLQGQAQ.QKFQSLHGqHQMQFSPSMGHQ
  410-  469 (48.04/15.37)	QFQGRQLP....sghvphgigqnqlnpgsqmnrhlsQFSGAANSALFNAAQT.TPNQMIPNMSAT
  470-  507 (56.79/19.48)	MSSQSLLP.RMQ.......................fEMPG.NNPQRSHASQI.LSDQMF.NMGAT
  508-  552 (35.35/ 9.40)	.NTGGMMPlQQQ.............hgsqgafgnmaQNAQNLQSNMV.ALQG.TP.QNHPNF...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.00|      32|      72|     188|     232|       3
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  146-  186 (43.42/14.54)	PISTQIDKLKAridmigAACESAEKVLadtRKAYCIG........TRQG
  188-  227 (47.58/39.90)	PVVPTLDKAQA......AKIQEQENLL...RAAVNYGealrlppdQRQN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.95|      11|     154|     269|     281|       5
---------------------------------------------------------------------------
  269-  281 (17.93/ 9.99)	GQSPLMqvPGSQL
  426-  436 (23.02/ 8.12)	GQNQLN..PGSQM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19564 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQAFPEASGMYSKNTPVSSSNLSGQSPLMQVPGSQLLGRSAASPGGTSITNFDNTTTSPLPYANSPRSGTNIMNTPSPQQQNQQQKQQQQQQQQQQQQQQQQKLMQLPPQQQLLAQQQFRQSAMQGLGQNPLHQLHDLQGQAQQKFQSLHGQHQMQFSPSMGHQQFQGRQLPSGHVPHGIGQNQLNPGSQMNRHLSQFSGAANSALFNAAQTTPNQMIPNMSATMSSQSLLPRMQFEMPGNNPQRSHASQILSDQMFNMGATNTGGMMPLQQQHGSQGAFGNMAQNAQNLQSNMVALQGTPQNHPNFNQQRQQNQQQ
2) MAAMEGALQNQPPQPLQQQQPQPAAVERLN
3) VNYGEALRLPPDQRQNPPALPMHLVDVLGGGDG
246
1
212
562
30
244










Molecular Recognition Features






MoRF SequenceStartStop




NANANA