<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19561

Description "Putative coactivator CBP, KIX domain-containing protein"
SequenceMDNNDGSPPNGGEPAMDAGDWRNRLQADLRQRIVNKTMDTLKRRLPFSGQEGLHELKKIAVRFEEKIYTAATSQSDYLQKISLKMLTMETKSQTKMANSLQSNSAGSSGMQPQVTNQGQLLSENIQSNIPPAGVQNSAGLSSALPPTSGLSLSSVLAPTPALNTSALLSALPPAPRRNMPASLSSALPSPQDVNISSSSFELFPICGLVPSKKDAVQSDWKAHSKICRASEYRCDCGTLFSRNDSFITHRAFCDALAAEESARFGSTSTATNINIPSFMSDSSSALPPAFSQDLLTNYHRQMQGQQQQQSGYSQQRISQQRIQQELIRNIQQQQEQQQMLLQKTPLSSSQQSHVQSASSAVESFLCRLQQNQQLAISQLTQPMLQQTAMPQQQILPPQHQQQQLTASLDSTAQIQDKNGADWQEEVYQKIKVMKETYLTTLREIYQKNATKLQQLESLPQQPKSYQLEKLKMLKTMLEHLITVLQVSKSNISPVLKWKLGLYEKQIIAFINTNRPKKLDSSLQQGHLPSPHLHSIEHSQSQITQVQSHENHMSPQLHSMNLQGSVATMQQNNVTGLQQNYVSSLSGVSTAQQNPMNPLQSSSNTDPGQGNPLYSSQQVPVSSIQEICVSGPQQANKNALSSQSGINMLQANINPLQSNSDFLHNRYLQQGQQLKQIILEKLNEQRQPQEQLMQKQQQQIFQQQQQLLPGQLDPQLHQISVVNDMNMNPLSSSQSGSDMLQGSIDSLKSNSGMVDNQCQKQETFSVNFKQLYPQLQMQQQWMQKPQMLQEKQQQQIQQLQQQAKQRLHLIYFIYLIFLVILYIAAVFGKGYWI
Length832
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.05
Grand average of hydropathy-0.621
Instability index71.73
Isoelectric point8.91
Molecular weight93203.20
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19561
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.28|      23|      24|     555|     577|       2
---------------------------------------------------------------------------
  546-  568 (35.69/10.43)	QSHENHMSPQLHSMNLQGSVATM
  569-  590 (29.57/ 7.44)	QQNNVTGLQQNYVSSLSG.VSTA
  725-  746 (30.02/ 7.66)	NMNPLSSSQ.SGSDMLQGSIDSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     215.76|      29|      93|     690|     718|       3
---------------------------------------------------------------------------
  294-  320 (35.23/ 9.97)	LLTNY.......HRQMQG..QQQQQ......SGYSQQRISQQ
  325-  354 (31.12/ 7.93)	ELIRN.......IQQQ....QEQQQMLlqktPLSSSQQSH.V
  388-  414 (30.63/ 7.68)	AM..........PQQQILppQHQQQQL....TASLDS.TAQI
  500-  525 (28.78/ 6.77)	GLYEK.......QIIAFI..NTNR.......PKKLDSSLQQG
  690-  718 (57.25/20.91)	QLMQK.......QQQQIF..QQQQQLL....PGQLDPQLHQI
  779-  809 (32.75/ 8.74)	QWMQKpqmlqekQQQQI...QQLQQ........QAKQRLHLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.24|      38|      40|     108|     145|       4
---------------------------------------------------------------------------
   85-  105 (24.30/ 7.26)	..............MLTMETKSQTKMA...N.S..LQSNSA
  108-  145 (67.04/32.26)	SGMQ.PQV.TNQGQLLSENIQSNIPPAGVQN.SAGLSSALP
  148-  188 (50.90/22.82)	SGLSlSSVlAPTPALNTSALLSALPPAPRRNmPASLSSALP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.04|      20|      41|     591|     614|       5
---------------------------------------------------------------------------
  591-  610 (39.09/15.44)	QQNPMNPLQSSSNTDPGQGN
  616-  635 (32.95/17.87)	QQVPVSSIQEICVSGPQQAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.42|      20|      29|     206|     229|       9
---------------------------------------------------------------------------
  206-  229 (32.86/33.13)	CGLVPSKKDAvqsdWKAHSKICRA
  236-  255 (38.57/27.00)	CGTLFSRNDS....FITHRAFCDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19561 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LDSSLQQGHLPSPHLHSIEHSQSQITQVQSHENHMSPQLHSMNLQGSVATMQ
2) LSGVSTAQQNPMNPLQSSSNTDPGQGNPLYSSQ
3) MDNNDGSPPNGGEPAMDAGDWRNRLQADLR
4) METKSQTKMANSLQSNSAGSSGMQPQVTNQGQLLSENIQSN
518
584
1
88
569
616
30
128










Molecular Recognition Features






MoRF SequenceStartStop




NANANA