<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19560

Description "Putative coactivator CBP, KIX domain-containing protein"
SequenceMDNNNGSPPQGGEPAMDAGDWRCQLQVDSRQRIVIKIMDTLKRHLPYSSEDELKKIAVTFEEKIYVAATSQSDYLRTISLKMLTMETKSQNRMANSLQSNCAGSSGIQLPSENIQNNIPPAGIQSSTGLPSVLPHDSGPQQQTLPPQHQQQQFIGLMDNNNGIHPQGGEPAMDAGDWRSQLQVDSRQRIVNKMVDTLKRHLPFSGQEGLDELKKIAVRFEEKIYVAATSQSDYLRKISLKMLNMDTKSQNTMAKSLQSNSAGSSGMQPQVTNQGQLLSENIQSNIPPPGVQNSAGLSSALPPTSVPQQQILPPQHQPQQLIASLDSTAQTGNTNGADWKEEVYQKYQKKMQKLYIFQHDVQRQKEQQQQLPGQLQPELHQISVVNDVNTNALSSSQSGINMLQANVIPPSILQKPQVYQNELRIQLLHQRQMQLQLMEKQQRIQQQQQQQAKQQVPGLSQAHQLPQLHQISVVKDVNVDASSSPTGSSMLQANIDPPHPNSITVDNKHLKQDQEQKMFQNQLKQPYQKQWTQKQQMLQEMQQLQIQKLQQQAKQQLHHIYVIYLIFLTILLGAAFFGTGY
Length580
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-0.734
Instability index64.83
Isoelectric point8.72
Molecular weight65243.99
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19560
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     836.08|     155|     157|       1|     156|       1
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    1-  155 (306.45/125.44)	MDNNNGSPPQGGEPAMDAGDWRCQL..QVDSR.QRIVIKIMDTLKR......HLPYSSE....DELKKIAVTFEEKIYVAATSQSDYLRTISLKMLTMETKSQNRMANSLQSNCAGSSGIQ........LPSENIQNNIPPAGIQSSTGLPSVLPHDSGPQQ....QTLPPQH....QQQQFIG
  157-  322 (288.24/120.06)	MDNNNGIHPQGGEPAMDAGDWRSQL..QVDSR.QRIVNKMVDTLKR......HLPFSGQ.eglDELKKIAVRFEEKIYVAATSQSDYLRKISLKMLNMDTKSQNTMAKSLQSNSAGSSGMQpqvtnqgqLLSENIQSNIPPPGVQNSAGLSSALPPTSVPQQ....QILPPQH....QPQQLIA
  326-  447 (155.15/61.01)	......STAQTGN..TNGADWKEEVyqKYQKKmQKLYIFQHD.VQRqkeqqqQLPGQLQ....PELHQISVVNDVNTNALSSSQS......GINML..............QANVIPPSILQ........KP.QVYQNELR...IQ........LLHQRQMQL....QLMEKQQ..riQQQQ...
  452-  537 (86.24/30.87)	............................................KQ......QVPGLSQahqlPQLHQISVVKDV..NVDASS.S..................PT...........GSSM..............LQANIDPPH.PNSITVDNKHLKQDQEQKmfqnQLKQPYQkqwtQKQQML.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19560 with Med15 domain of Kingdom Viridiplantae
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