<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19557

Description "Putative coactivator CBP, KIX domain-containing protein"
SequenceMDTNNWRPPQGGEPAMDAGDWRSQLQQDSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIGTSLPSNSAGNSNRPPDPGSFMQPQVPNQGQSLPMPVPANQSQPRQQLLSQNIQNNIPPNSAGLSSALSPASGLTQTPVPSIVGNANLQSMSGTSQNSLGNSIGQGVTSNMFANSQRQMPGRQQVVPQQQQQQTQNSQQYMYQQQLQQQLMKPKFQQQGNIQLVPNHMQQQQQQQQNLLQSPQLQSSQQSVMQPPAVQSSLSSLQQNQQSAMQHSSQAMLQQHPQSVLRQQQQPQQSSVVHQQQTPIPQQPILPPQQQQQQPQLMVQQPNSTNLPQNQLIGQQNNVGDMQQQQQQQQQQRLLSQQNNMLNLQQQQQQQQHQLMAQQNNLSNMHQQQLGTQSNVTGLQQQQHLGTQTGNSSMQTNQHSAHMLQSKVQQQHQSPALQGHQSQPQVSQQQLLSQIQSQPAQIQQQMGMQQQSNPLQRDMQQRIQASGQVSGSMLQPPNVMDPQKQLYQAQRALPETSSTSLDSTAQTGHTNGADWQEEVYQKIKVMKDMYYPELSEMYQKIASKLHQHDSLPQQPKSDQLEKLKMFKTMLERLITVLQISKTSITPGLKEKLGLYEKQIINFINTNRPRKPVSSLPPGQLPPPHMQSMQQSQSQITQVQSHENQMNPQLQSLNLQGSVPTMQQNNMTGLQQNSMSSLSGVSTAQQNMMNPLQPSSNMDPGQGTTLNSLQQVPVGSIQQTPVSAPQQANMNALSSQNGINMLQSNINPLQSNSGMLHSQHLKQQEQQLYQNQLKQQQFQQRQMQQQQLMQKQIIQQQQQQQQQQQQQLQQQAKQQLPGQLQAHQMSQLHQISDVNDVKIRPGMGVKPGAFQQQMSVGQRAYPHSQLKPGSPYPITSSNQLLQAQSPQLSQHSSPQIDQQLLVPKAQNASSPFVIPSPSTPIAPSPMPGDSEKPSSLANAGNVGHQQTTVVGAQVQSLAIGTPGISASPLLAEFIGPDGTHANALSAISGKSSVTEQPLERLIKAVKSISPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTTNGTRKMRRYTSAMPLNVVSSGGSMNDSFKQLTCSETSDLESTATSRIKRPRIEANHALMEEIREINRRLIDTVVDISDEDVDPSAAAAEGGEGTIVKCSFDAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSISLRSISQPMSLGEIARAWDNCARTVISEHAQRSGGGSFSSKYGTWENCLSAA
Length1345
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.03
Grand average of hydropathy-0.789
Instability index71.71
Isoelectric point9.40
Molecular weight148496.78
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19557
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1314.03|     386|     472|     249|     699|       3
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    9-  221 (190.28/23.59)	...................................................................................................................................PQG...GEPAmDAGDWRSQLQQDSRQRI....................VNKIMDTLkrHLPFSGQEGLHELkkIAvrfeekiytaatsQS......DYLRKISL.KMLTMET..................KSQNTIGTslpsnSAGNSNRPPDPGSF..MQPQVP.NQGQSLPMpvPANQSQP..RQQ.LLSQnIQ..NNiPpnsA......GLSSALSP..............ASGLTQTPvPSIVG.NANL....QSMSGTSQNSLGNSIGQG....................VT........SNM......FAN.........SQRQMPGRQQV.................................................................................................................
  249-  699 (610.63/145.85)	PkfqqqgniqlvpnhmqqqqQqqqnlLQSPQLQSSQQSvMQppavQSSLSSLQQNQQSAMQHSSQAmlQQ......HPQSVLRQQQQPQQSSVvhqQQTP...IPQQPILPPQQQQQQPqlmVQQPNSTNLPQNQLIGQQN.NVGDMQQQQQQQQQQRL....................LSQQNNML..NLQQQQQQQQHQL..MA.............QQ......NNLSNMHQ.QQLGTQSNV.............TGLQQQQHLGT.....QTGNSSMQTNQHSAHMLQSKVQ.QQHQSPAL..QGHQSQPQVSQQQLLSQ.IQ..SQ.P...AQIQQQmGMQQQSNPLqrdmqqriqAsgqVSGSMLQP.PNVMDPQKQLyQAQRALPETSSTSLDSTAQTGHTN....GADWQEEVYQKIKVMKDmyyPELSEM......YQKIASKLHQHDSLPQQPKSDQLeklkmfktmLERLI.TVLQISKTSIT....................PGLKEKLGLYE......K...QIINFI.......NTNRPRKPVSSLPPGQLPPPhmQSMQQSQSQIT
  710- 1161 (513.12/88.10)	P...................Q.....LQSLNLQGSVPT.MQ....QNNMTGLQQNSMSSLSGVSTA..QQnmmnplQPSSNMDPGQGTTLNSL...QQVPvgsIQQTPVSAPQQANMNA...LSSQNGINMLQSNINPLQS.NSGMLHSQHLKQQEQQLyqnqlkqqqfqqrqmqqqqlMQKQ..II..QQQQQQQQQQQQQ..LQ.............QQakqqlpGQLQA.HQmSQLHQISDVndvkirpgmgvkpGAFQQQMSVGQ.....RAYPHS.QLKPGSPYPITSSNQlLQAQSPQL..SQH.SSPQIDQQLLVPK.AQnaSS.P...FVIPSP......STPI.........A............PSPMPG.....DSEK..P....SSLANAGNVGHQQttvvGAQVQSLAIGTPGISAS...PLLAEFigpdgtHANALSAISGKSSVTEQP..............LERLIkAVKSISPKALSasvsdigsvvsmidriagsaPGNGSRAAVGEdlvamtKcrlQARNFIthdgttnGTRKMRRYTSAMPLNVVSSG..GSMNDSFKQLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.20|      31|      48|    1234|    1264|       4
---------------------------------------------------------------------------
 1234- 1264 (56.76/29.74)	LSPNLKSQYASAQMSPIQPLRL.LVPTNYPNC
 1283- 1314 (49.44/24.95)	LSVKAKSRFSISLRSISQPMSLgEIARAWDNC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19557 with Med15 domain of Kingdom Viridiplantae
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