<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19553

Description "Putative coactivator CBP, KIX domain-containing protein"
SequenceMDANYWSPSQGGEQFMYVGDWRSQLLPDLRQVFLNKIMDTLKRHLPFSGPEGLLELQKIAVRFEEKVYTAATSQSDYERKISLKMLTMETKSQNTRGSSIQFNSASNSKRLPDPVLMNTSNNGWPPQGGGPSMDTSDWSQLPSDAQHGWQQGAPQQQRQQTSNSQQYYIYSQQYMYQQQLQQQLLLQSHIQLQQEQQQIPLQKTQLQSSQQSASVMQPSVEPLHLSVQPSEQLPPDARHSIVNKITNVLKRNPSCGQIGLPELERIAATLEEKIYAVASSQADYLHKVSLKMLTMETQITAPPSNDSLESLFASLDLQD
Length319
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.07
Grand average of hydropathy-0.709
Instability index72.13
Isoelectric point5.72
Molecular weight36113.07
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19553
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     280.17|      68|     205|      24|      91|       1
---------------------------------------------------------------------------
   24-   91 (122.89/77.61)	QLLPDLRQVFLNKIMDTLK.RHLPFSGPEGLLELQKIAVRFEEKVYTAATSQSDYERKISLKMLTMETK
  133-  167 (36.98/18.54)	..............MDTSDwSQLPSDAQHG...WQQGAPQ.QQRQQTSNSQQ..Y..............
  232-  298 (120.31/75.83)	QLPPDARHSIVNKITNVLK.RN.PSCGQIGLPELERIAATLEEKIYAVASSQADYLHKVSLKMLTMETQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.62|      17|      19|     191|     209|       2
---------------------------------------------------------------------------
  172-  188 (30.35/12.48)	QQYMYQQQLQQQLLLQS
  193-  209 (29.27/ 9.45)	QQEQQQIPLQKTQLQSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19553 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NTRGSSIQFNSASNSKRLPDPVLMNTSNNGWPPQGGGPSMDTSDWSQLPSDAQHGWQQGAPQQQRQQTSNS
94
164










Molecular Recognition Features






MoRF SequenceStartStop




1) QQYYIYSQQYMY
165
176