<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19550

Description Uncharacterized protein
SequenceMELMQPSHPPPHHAGEPTSGFSSPASFARGFDSPATASQLPEIFEETGGGDGGSDKVHVAVGKSVDKAVSLLRWSLKQFGGREICILHVHQPSQLIPTLLGKLPASKANAEVVCAFRREEKEQKMKLLQSYLSICCREKIKASIAMVEADEIQKGIVESVHRYGVRKLVMGAVPENCMKVKRSSSKASYAAKNAPLFCEIWFINKGKPLWTRAASEGQSSLPSCSQLQIASEESFKSFQHRKNEAFLPECLQSSSANNDFSRISNCFQSESVRSEAAQSSSTLSCSTHTCLPHNIHSSTRTSSSSGSGYSSAEGRVSLDSDLCSRLTEATLEAEASMEKASSELLKCKRLESEAIEAIDKVKAFEFAHAREVKLRTEAEDALRTTLEEQEKIMEEKEELSTNIRNTMRNIALLDSRVQEANRRSEEASGEVKQIQTSIAALCQEKQGIQRQKMEALRWLERWRSRRQAGAANYNGLTGSVEELLKLAEFSLSDLQTATCNFSESFKIGQGGYGCVYKGEMLGRTVAIRKLHPHNMQGQSEFQQEVQVLCKIQHPHLVTLLGVCPEAWSLVYEYLPNGSLQDHLFRKSNVSFMTWKTRVRIIAEISSALCFLHSSKPEKIVHGNLKPQNILLDSELRCKICDFGICRLVTEENLSSASFRRFTEPKGAFSYTDPELQRVGVLTPKSDSYSFGLIILQLVTRRPPVGLASEVRRALLSGNLTAILDSSAGEWPESVAKRLVQLGLQCCELNSRERPELTPALVREFEQLHVSEERSVPSFFLCPIRQEIMHDPQVAADGFTYEGEALLKWLQNGGETSPMTNLKLSHLHLTPNHALRLAIQDWLCKC
Length845
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.06
Grand average of hydropathy-0.361
Instability index59.29
Isoelectric point7.28
Molecular weight93983.98
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19550
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.00|      25|      25|     389|     413|       2
---------------------------------------------------------------------------
  374-  398 (34.63/25.94)	LRTEAEDALRTTLEE...QEKIME...EKEE
  399-  426 (31.91/23.25)	LSTNIRNTMRNIALL...DSRVQEanrRSEE
  427-  454 (30.46/21.82)	ASGEVKQIQTSIAALcqeKQGIQR...QKME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.95|      11|      23|     323|     333|       3
---------------------------------------------------------------------------
  323-  333 (18.96/10.12)	CSRLTEATLEA
  347-  357 (18.98/10.14)	CKRLESEAIEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.57|      13|      25|     242|     255|       4
---------------------------------------------------------------------------
  242-  254 (23.33/11.77)	KNEAFLPECLQSS
  286-  298 (23.24/ 7.08)	STHTCLPHNIHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     170.86|      49|      49|     569|     617|       5
---------------------------------------------------------------------------
  541-  565 (20.24/ 8.23)	..........................FQQEVQVLCK..IQHPhLVTLLGVCPE
  569-  617 (85.27/60.10)	LVYEYL.PNGSLQDHLFRKSNVSFMTWKTRVRIIAE..ISSA.LCFLHSSKPE
  619-  665 (65.35/44.21)	IVHGNLkPQNILLDSELRCKICDFGI....CRLVTEenLSSA..SFRRFTEPK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19550 with Med32 domain of Kingdom Viridiplantae
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