<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19543

Description Uncharacterized protein
SequenceMSQVDEADDEPSLAQSIEIEQKPQTPNPEQPQEEEEEEEEPQNDDDPMEEDASSVSPSAVFCIGLKQPRSDLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVNADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGAANLVRDASSWLLEHEWQQDIAVVTKWLSGVSPYRWLSSKSSSPSNAKSTFEEKFLSQESQNSDRWPNFLCVCSVFSSGSVQLHWSQWPPNQSTAAPKWFQTSKGLLGAGPSGIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGNGFHVTPKITTSNGVPPSISPPNWAGFSPLAAYLFSWQDYLISESKQGRKQTDSDFSDTVPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSTFGGQAPMQTVWLSKVDTSIQPTNDFKSHQAAATGVISEPKKTPDSSIEKAKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHIFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDSSKDRTILKILRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVQEPWLASGETLSSIDPEAMAVEQALVSNIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSTGSPATNQGGQNGPTSSTGNTQMQAWVQGAIAKISSTSDGVPNSTPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFTGAAQRNTDANMQKPQPGAPGKVEEISSVSVKPSSTIVRPEESQVARAGQIIPAAKGVEEGPAGRSRLGAGNAGQGYTFEEVKVLFLILMDLCKRTANLVHPLPVSQVGSGNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDVGLLDDTPKLCNSHDPVDLGLMESSDVYYGARGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLDGVWYKCIRCLRQTSAFASQGATSPPNQTERETWWISRWAYCCPMCGGTWVRVV
Length1243
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.08
Grand average of hydropathy-0.229
Instability index48.75
Isoelectric point5.53
Molecular weight134785.16
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19543
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      13|      15|     818|     830|       1
---------------------------------------------------------------------------
  818-  830 (24.41/14.42)	NRNMVASPTQSTG
  835-  847 (25.33/15.27)	NQGGQNGPTSSTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     311.71|      96|     109|     328|     426|       2
---------------------------------------------------------------------------
  328-  421 (146.99/84.44)	.......................................NGFHVTPKITTSNGVPPSISP...PNW.AGFSPLAAY.LFSWQDyliSESKQGRKQTDSDFSDTVPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTA
  422-  530 (134.29/70.57)	VAFDP......................trggsviavvivEGQYMSP.YDPDEG..PSITGwrvQRWeSSVQPVVLHqIFGNP....TSTFGGQAPMQTVWLSKVDTSIQPTNDFKSHQAAATGVISEPKKTPDSSIEK
  534-  609 (30.43/ 8.93)	VSFDPfdlpsdvrtlarivysahggeiavaflrggvhifSGPNFTPVDNYQINVGSAIAA...PAF.SSTSCCSAS.V..WHD.......................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.78|      17|      17|     778|     794|       3
---------------------------------------------------------------------------
  778-  794 (28.66/21.09)	IQAYVDAVLDLASHFIT
  796-  812 (30.12/22.58)	LRRYASFCRTLASHAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.26|      18|      19|     734|     751|       4
---------------------------------------------------------------------------
  734-  751 (29.08/16.27)	LGKGIESALINPSALVQE
  754-  771 (29.18/16.34)	LASGETLSSIDPEAMAVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.53|      17|      19|     228|     244|       7
---------------------------------------------------------------------------
  228-  244 (31.27/14.62)	F...EEKFLSQESQ.NSDRWP
  246-  266 (23.25/ 9.10)	FlcvCSVFSSGSVQlHWSQWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.77|      17|      18|     692|     709|       8
---------------------------------------------------------------------------
  692-  709 (27.05/22.79)	TQHRQQYGPSLDrIKCRL
  713-  729 (27.72/17.68)	TNAQEVRAMVLD.MQARL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.84|      20|     902|      21|      58|       9
---------------------------------------------------------------------------
   21-   58 (28.85/44.24)	QKPQTPNPEQPqeeeeeeeepqndddpmeEDASSVS..PS
  942-  963 (33.99/16.12)	QKPQPGAPGKV..................EEISSVSvkPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.71|      43|     763|      89|     133|      10
---------------------------------------------------------------------------
   89-  133 (81.27/54.22)	AWCgkLNAIACASETCARIPSSNANP...P.FWIPIHIVIPERPTECAV
  853-  899 (72.44/42.03)	AWV..QGAIAKISSTSDGVPNSTPNPisgPsSFMPISINTGTFPGTPAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.46|      23|     535|     641|     663|      11
---------------------------------------------------------------------------
  641-  663 (46.75/23.26)	RAIAER.FWWSLLVGVDWWDAVGC
 1178- 1199 (40.48/19.24)	RDVVTA.VWKTGLDGV.WYKCIRC
 1215- 1232 (32.22/13.96)	PNQTEReTWW.....ISRW.AYCC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.09|      12|      18|     150|     161|      12
---------------------------------------------------------------------------
  150-  161 (23.67/11.65)	WSPTSCPRALLI
  171-  182 (22.42/10.61)	WTQPSQGAANLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19543 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVASPTQSTGSPATNQGGQNGPTSSTGNTQ
2) MSQVDEADDEPSLAQSIEIEQKPQTPNPEQPQEEEEEEEEPQNDDDPMEEDASS
814
1
850
54










Molecular Recognition Features






MoRF SequenceStartStop




1) MSQVDEADDEPSLAQSIEIEQKPQTPNPEQPQEEEEEEEEPQ
1
42