<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19538

Description Uncharacterized protein
SequenceMKRVKDTRNIFTGAVNGKKLIEVPICASSAFFSLQSKQSHRSESENKAKLQILSFPPPCNELNPNSSSSKVIPMAVVPVHQPSSHLWDSVLQLTKSAQDKNSDPLLWALQLSSSLNSAAVPLPSVELAHLLVSHICWGNHVPITWKFLEKALTVKIVPPMLVLALLSTKVVPNRHIHPAAYRLYMELLKRHTLSFASQLNGPNFQKIMRSIDDVLQLSQQYGLPVCEPGVLLVEFVFSIIWQLLEASLDDEHLLELTPDKSSRWPTRPQDMEIDGPDSFNEKRSEQNEGLKKANTAMAIEIIVEFLQNKVTSRILYLARRNMPSHWGGFVQQLQVLGAHSSVLRTLKHITPESLLQLSSDSRRLLNREGKTISRQEFHAVLSFGSLMSSACQSHGASSSAFWLPIDLFLEDAMDGSEVAGTSAIETLTGLLKALQAINGTTWHNAFLGVWIAALRLIQRERDPKEGPVPRLDTCLCMLLSITTLAVTNIVEEEEAELLKETERDPTNQGKEKLALGKRRRDLITCLQLLGDHEALLTTPQSVCSVVNQAVAKAMMFRSGHLVSNGYYESIGVNDMPINCMGNLRHLIVEACIARNLLDTSAYFWPGYVRSSNQVMRNVSGQVPAWSSLMKGSPLTPPMVNALVTTPASSLAEIEKIYEIAVSGSDEEKISAATILCGASLVRGWNIQEHTCLFIIKLLSPPVPSDYSGSDSHLISYASFFNVLLVGVSSIDTVQIFSLLGLVPLLAAALMPICEVFGSSVPSPSWTPTTGEELSCHAVFSNAFTLLLRLWRFDHPPLEHMMGDLPTVGSQVGPEYLLVLRNARLASFGNSPMDRIKSRRVSKFITFSSDPIIMDSFPKLKLWYQQHQKCICSTLSGLVPGTPVHQIVDALLTMMFRKINRSSHPVTPATSGSSNSSASGTDESSIKLKVPAWDILEATPFVLDAALTACAHGRLSPRELATGLKDLADYLPATLATMVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAVGGSAPATLPLPFAALISLTITYKLDKASERALTLIGPALNSLAAGCPWPCMPILASLWAQKAKRWSDYLVFSASQTVFHHNSDAVVQLLKSCFTSTLGLSSSHVYSNGGVGALLGHGFGSHFSGGITPVAPGILYLRVHRSVRDVMFMTEEILSILMLSVRDIASSGLPRERVEKLKKTKYGMRYGQVSLTAAMARVRLAASLGATLVWISGGSSLVQSLIKETLPSWFISGHGLDQEGRESGGMVAMLGGYTVAYFAVLCGTFAWGVDSASPASKRRPKVLGAHLEFLASALDGKISLGCDWAMWRAYVSGFVSLMVACTQKWVLEVDVEVLKTLSKGLRLWNEEELALALLGLGGVGAMGAAAELVVECEF
Length1403
PositionTail
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.07
Grand average of hydropathy0.131
Instability index48.45
Isoelectric point7.75
Molecular weight152817.18
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19538
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.46|      64|     108|     915|    1022|       1
---------------------------------------------------------------------------
  915-  990 (91.58/119.54)	SSA.SGTDESSIKLKVPAWDILEATpFVLDAAltacahgrlSPREL...ATGLKDLADYLP.ATLATMVSYFSAEVTRgiW
 1027- 1095 (98.88/46.33)	SLAvGGSAPATLPLPFAALISLTIT.YKLDKA.........SERALtliGPALNSLAAGCPwPCMPILASLWAQKAKR..W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     333.93|     103|     108|     615|     721|       2
---------------------------------------------------------------------------
  615-  714 (141.37/91.77)	................................................MRNVSG..QVPAWsSLMkGSPLTPPMVNALVTTPASSLAEI..EKIYEIAVSGSDEEKISAATILCGA..SLVRGWNIqEHTCLFIIKLLSPPVPSDYsGSDSHLI
  715-  818 (148.26/81.34)	SYASFFN.......................................vlLVGVSSidTVQIF.SLL.G..LVPLLAAALM..P...ICEVfgSSVPSPSWTPTTGEELSCHAVFSNAftLLLRLWRF.DHPPLEHMMGDLPTVGSQV.GPEYLLV
  823-  914 (44.30/18.46)	RLASFGNspmdriksrrvskfitfssdpiimdsfpklklwyqqhqkciCSTLSG..LVP.......GTPV.HQIVDALLTMMFRKINRS..SHPVTPATSGSSN..................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.03|      19|     114|    1145|    1165|       3
---------------------------------------------------------------------------
 1145- 1165 (34.45/25.14)	GHGFG..SHFSGGITPVAPGilY
 1262- 1282 (32.59/17.57)	GHGLDqeGRESGGMVAMLGG..Y
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.50|      26|      39|     101|     128|       4
---------------------------------------------------------------------------
  101-  128 (35.79/28.07)	NSDPLLWALqLSSSLNSAAVPlPSVELA
  139-  164 (46.71/27.16)	NHVPITWKF.LEKALTVKIVP.PMLVLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.17|      16|      39|     456|     471|       5
---------------------------------------------------------------------------
  456-  471 (28.84/19.63)	LIQRERDPKEGPVPRL
  498-  513 (27.33/18.20)	LKETERDPTNQGKEKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19538 with Med33 domain of Kingdom Viridiplantae
Unable to open file!