<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19536

Description Uncharacterized protein
SequenceMDPEGAKFGRGPRELTGAVDLISHYKLQAHHEFFCKRSLPVSISDTHYTHNVVGDTEIRKGEGMQLDQLIQSTYSRDTKPRIQPFDLDILREAFQLKETAPIDLPSADKGTPTIAGKSKSGSKDKERKHKKHRDKDRDKDKEKEKEHKKHKHRHKDRSKDKDKEKKKEKHDSAGDPSKKHEKKRKHDGDEDLNDVQRHKKSKHKSSKLDEVGVIKVAG
Length218
PositionHead
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.04
Grand average of hydropathy-1.541
Instability index34.13
Isoelectric point9.58
Molecular weight25097.94
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19536
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.93|      17|      17|     129|     145|       1
---------------------------------------------------------------------------
  129-  145 (33.81/11.72)	HKKH..RDKDRDKDKEKEK
  147-  165 (29.13/ 9.24)	HKKHkhRHKDRSKDKDKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.56|      13|      15|     182|     195|       3
---------------------------------------------------------------------------
  182-  195 (18.88/11.22)	KKRKHDGDEdLNDV
  199-  211 (21.68/ 8.66)	KKSKHKSSK.LDEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.09|      33|      59|      22|      54|       4
---------------------------------------------------------------------------
   22-   54 (60.32/39.44)	ISHYKLQAHHEFF.CKRSLPVSI.SDTHYTHNVVG
   82-  116 (46.77/29.25)	IQPFDLDILREAFqLKETAPIDLpSADKGTPTIAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19536 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKETAPIDLPSADKGTPTIAGKSKSGSKDKERKHKKHRDKDRDKDKEKEKEHKKHKHRHKDRSKDKDKEKKKEKHDSAGDPSKKHEKKRKHDGDEDLNDVQRHKKSKHKSSKLDEVGVIKVAG
2) THYTHNVVGDTEIRKGEGMQLDQLIQSTYSRDT
96
46
218
78










Molecular Recognition Features






MoRF SequenceStartStop




1) DKERKHKKHRDKDRDKDKEKEKEHKKHKHRHKDRSKDKDKEKKKEKHDSAGDPSKKHEKKRKHDGDEDLNDVQRHK
124
199