<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19527

Description Putative transcription factor bHLH family
SequenceMANNPQYSGLQPLRPPMVGPVDAPRSMPPMGFQFRPVVPAPHSQEFIPVASQNFQHVGRGVPPMNVRLPPAIHQPQFPQPVQQLPPRSGPPGHGMLPQAIPLPVGQPIRNFAPELPVPQPNVLPPNNVMSNLSAPRPPLSSSYTFATSSYGQIPRSFNDSNQYQSISQLHAPNVSSEGQVRLSSDSQSAVASVPLQPTGERPSVTTSVAPEASIQPISLGGNPAQWIDHKSADGRRFYYNRRTRLSTWEKPFELMTPLERADASTNWKEFTSPDGKKYFHNKVTKESRWTIPEELKLARQQVEKASVKDIPQEMPVNHHTTVSVSPPVSEAHTSTTTAQVASSPVSVAPVVATSVVQTSTVSRSSVSPVVASPVKENADGVQIPAVTPSSDAFENAEAAVTVNNTAAELMEDPKNLPTQEFVSSSEEVHVQENKEPTNDVTGEKINDIASEEKPIDPEPISYSNKLEAKDAFKALLESTNIGSDWTWDRAMRVIINDKRYGALKTLGERKQAFNEFVAQRKKQEVEERRIKQKKAREDFTKMLEECSELTSSTRWGKLESIFENDERFKAVERERDRRDLFDSYLEELQKKERAKAQEERKLHIVEYRQFLESCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQRRIQKEELRKAERKNRDEFRKLMDDHIAAGTLSATTHWRDYILKVKDLPAYVAVVSNTSGSTPKDLFEDVIEELEKQYQSDKIRIKDVVKSGKIVLSSTWDLEAFKTAISNDIGSPPISDANLMLVFEELMERVREKEEKEAKRHKRLADDFFHLLSSMKEITPSSKWEDCKSLLEVSSEYSAIGEESSCKEIFDKHIMQLKEQAKEKERKRKEEKERKEKDREERERRRSKQRRERGVGYERDKEDHLMKDGEDTEIIDIMEVNDSKEKRRSGKDDDKKHRKRHQSDEDHQTNGSENDRSKRSHGSSSDHKRSRRASGPESDTESRHRRHKRDHRNGSRRSGDHEELEDGEFGDVGESR
Length1022
PositionUnknown
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.06
Grand average of hydropathy-1.001
Instability index63.85
Isoelectric point6.27
Molecular weight116736.83
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19527
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.90|      16|      16|     320|     335|       1
---------------------------------------------------------------------------
  320-  335 (30.31/17.01)	TT.......VSVSPPVSEAHTST
  336-  358 (19.59/ 8.50)	TTaqvasspVSVAPVVATSVVQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     453.57|      64|      67|     529|     592|       2
---------------------------------------------------------------------------
  467-  524 (68.82/46.24)	............EAK.D....AF.K....ALLE...STNIGSDWTWDRAMRVII.NDKRYG........AL...KTLGERKQA........FNEFV....AQRKKQE
  529-  592 (101.14/72.14)	RIKQ.......KKAR.E....DFTK....MLEE...CSELTSSTRWGKLESIFE.NDERFK........AV...ERERDRRDL........FDSYL....EELQKKE
  593-  659 (84.98/59.18)	RAKA.......QEER.KlhivEYRQ....FLES...CDFIKASSQWRKVQDRLE.ADERCS........RL...EK.IDRLEI........FQEYL....RDLEKEE
  664-  736 (41.40/24.26)	RIQKeelrkaeRKNR.D....EFRK....LMDDhiaAGTLSATTHW.........RDYILKvkdlpayvAVvsnTSGSTPKDL........FEDVI....EEL....
  738-  800 (32.84/17.41)	..KQ.......YQSD.KirikDVVKsgkiVLSS...TWDL.................EAFK.......tAI...SNDIGSPPIsdanlmlvFEELM....ERVREKE
  806-  871 (82.75/57.40)	R..H.......KRLA.D....DFFH....LLSS...MKEITPSSKWEDCKSLLE.VSSEYS........AI...GEESSCKEI........FDKHImqlkEQAKEKE
  892-  938 (41.65/24.46)	RSKQ.......RRERgV....GYER....DKED.....HLMKDGEDTEIIDIMEvNDSK...............EKRRSGKD.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.90|      16|      18|      20|      37|       3
---------------------------------------------------------------------------
   29-   45 (27.70/11.05)	PMGFQFRP.........vVP..APHSQE
   63-   90 (18.21/ 8.38)	PMNVRLPPaihqpqfpqpVQqlPPRSGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      16|      20|     101|     120|       4
---------------------------------------------------------------------------
  101-  120 (25.64/21.66)	PLPVgqpiRNFAPELPVPQP
  122-  137 (29.79/14.72)	VLPP....NNVMSNLSAPRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.16|      16|      17|     280|     295|       5
---------------------------------------------------------------------------
  239-  254 (26.98/14.44)	YNRRTRLSTWEKPFEL
  280-  295 (28.14/15.36)	HNKVTKESRWTIPEEL
  299-  314 (23.03/11.26)	RQQVEKASVKDIPQEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.13|      16|      18|     939|     954|       6
---------------------------------------------------------------------------
  939-  954 (28.01/12.40)	DDKKHRKRHQSDEDHQ
  960-  974 (24.29/ 9.82)	NDRSKRS.HGSSSDHK
  984-  998 (26.82/11.57)	SDTESRHRRHK.RDHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.31|      14|      17|     417|     433|       8
---------------------------------------------------------------------------
  417-  430 (24.27/ 7.27)	PTQEFVS......SSEEVHV
  436-  455 (17.04/ 6.00)	PTNDVTGekindiASEEKPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.33|      17|      18|     152|     168|       9
---------------------------------------------------------------------------
  152-  168 (30.03/19.55)	QIPR.SFNDSNQYQSISQ
  170-  187 (24.30/14.27)	HAPNvSSEGQVRLSSDSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.06|      23|      42|     216|     238|      13
---------------------------------------------------------------------------
  216-  238 (43.20/29.28)	PISLGGNPAQWIDHKSADGRRFY
  257-  279 (41.86/28.12)	PLERADASTNWKEFTSPDGKKYF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19527 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DKHIMQLKEQAKEKERKRKEEKERKEKDREERERRRSKQRRERGVGYERDKEDHLMKDGEDTEIIDIMEVNDSKEKRRSGKDDDKKHRKRHQSDEDHQTNGSENDRSKRSHGSSSDHKRSRRASGPESDTESRHRRHKRDHRNGSRRSGDHEELEDGEFGDVGESR
2) MANNPQYSGLQPLRPPMVGPVDAPRSMPPMGFQFRPV
3) PIRNFAPELPVPQPNVLPPNNVMSNLSAPRPPLSS
4) QQVEKASVKDIPQEMPVNHHTTVSVSPPVSEAHTSTTTAQVASSPVSVAP
5) SFNDSNQYQSISQLHAPNVSSEGQVRLSSDSQSAVASVPLQPTGERPSVTTSVAPEASIQ
6) VGRGVPPMNVRLPPAIHQPQFPQPVQQLPPRSGPPGHGMLPQAIPLPVG
7) VSRSSVSPVVASPVKENADGVQIPAVTPSSDAFENAEAAVTVNNTAAELMEDPKNLPTQEFVSSSEEVHVQENKEPTNDVTGEKINDIASEEKPIDPEPISYS
857
1
107
300
156
57
361
1022
37
141
349
215
105
463










Molecular Recognition Features






MoRF SequenceStartStop




NANANA