<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19520

Description Putative transcription factor bZIP family
SequenceMASSKLVSVSTANSDLPRDSSICSLSTLIADVDKHNHSITMDDLLKNIYNDQPSASPPPPPSMDGGASASAVAPGRTVEEVWKEIVAGGGGGGADGEDEAAEGEADQVRAEMTLEDFLTRAGAVREEDVGVGPGAVVPIGYGQFQVQQPPPPQPQGQLVYANNNNGTTSGGGGRGTKRRAVQEAPLDKATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLVREEAEQKKERYKKLMENLIPVVEKRRPARVLRRVQSMHW
Length272
PositionHead
OrganismRosa chinensis (China rose)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Rosoideae> Rosoideae incertae sedis> Rosa.
Aromaticity0.03
Grand average of hydropathy-0.741
Instability index57.20
Isoelectric point5.81
Molecular weight29536.63
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
DNA-binding transcription factor activity	GO:0003700	IEA:InterPro

GO - Biological Process
positive regulation of transcription, DNA-templated	GO:0045893	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19520
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.76|      16|      89|      49|      65|       1
---------------------------------------------------------------------------
   49-   65 (29.99/24.96)	YNdQPSASPPPPPSMDG
  141-  156 (34.77/23.49)	YG.QFQVQQPPPPQPQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.00|      38|      80|      88|     128|       2
---------------------------------------------------------------------------
   88-  128 (59.14/36.77)	GGGGGGAD..GEDEAAEGEADQVRAEMTLEDfltRAGAVREED
  170-  209 (59.87/30.60)	GGGGRGTKrrAVQEAPLDKATQQKQRRMIKN...RESAARSRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.22|      21|      29|     214|     234|       3
---------------------------------------------------------------------------
  214-  234 (32.99/23.56)	YTVELESLVTQLEEEN.ARLVR
  244-  265 (30.23/21.04)	YKKLMENLIPVVEKRRpARVLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19520 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDDLLKNIYNDQPSASPPPPPSMDGGASASAVAPG
2) VEEVWKEIVAGGGGGGADGEDEAAEGEADQVRAEMTLEDFLTRAGAVREEDVGVGPGAVVPIGYGQFQVQQPPPPQPQGQLVYANNNNGTTSGGGGRGTKRRAVQEAPLDKATQQKQRRMIKNRESAARSRERKQA
41
78
75
213










Molecular Recognition Features






MoRF SequenceStartStop




1) AVAPGRTVEEVWKEI
2) AVQEAPLDKATQQKQRRMI
3) LLKNIY
71
180
44
85
198
49