<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19504

Description Uncharacterized protein
SequenceMDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQEFKQRRDGIVERLYATSMVTRCKSCDFGERSNVYQVNKEDSPHEGKGGGKGSPFTPHSENEDDDMDPYGGLFDDEQKRVLEIKERLELPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQPGEPEPAGLMAADGDSPQQKLLLNGRQQVPDFAYSPNPHNGSFGSEKNNSEPERKPKPIPPCRKDPPSRHTHSTPPQNVQRQREQKESNFDSERLASARKRLQESYKEAENAKKQRTVQVMDIHELPKPKNAFFAKNKGGGSQGRHCDAINKPKFTHPQKMLNLEDKGMHMQMLN
Length365
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-1.046
Instability index54.08
Isoelectric point6.29
Molecular weight41614.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19504
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.31|      19|      21|     302|     320|       1
---------------------------------------------------------------------------
  302-  320 (33.53/19.04)	AK.KQRTVQVMDIHELPKPK
  325-  344 (30.78/16.99)	AKnKGGGSQGRHCDAINKPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.32|      10|      20|      73|      82|       3
---------------------------------------------------------------------------
   73-   82 (19.68/10.03)	EDSPHEGKGG
   95-  104 (20.64/10.85)	EDDDMDPYGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.02|      12|      16|     271|     283|       4
---------------------------------------------------------------------------
  271-  283 (17.30/15.94)	RQREQkESNFDSE
  289-  300 (20.72/13.43)	RKRLQ.ESYKEAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19504 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VYQVNKEDSPHEGKGGGKGSPFTPHSENEDDDMDPYGG
2) WVRVNQPGEPEPAGLMAADGDSPQQKLLLNGRQQVPDFAYSPNPHNGSFGSEKNNSEPERKPKPIPPCRKDPPSRHTHSTPPQNVQRQREQKESNFDSERLASARKRLQESYKEAENAKKQRTVQVMDIHELPKPKNAFFAKNKGGGSQGRHCDAINKPKFTHPQKMLNLEDKGMHMQMLN
67
185
104
365










Molecular Recognition Features






MoRF SequenceStartStop




1) FFAKNK
2) RKWKE
323
176
328
180