<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19503

Description Uncharacterized protein
SequenceMAVSIQAKGTTVWDWVLEYTKSAQEKNSDPLLWAVQLGSSLNSAGVSLPSIDLAHLLVSYICWDNHVPIAWKFLEKALTVKFVPPMLVLALLSSRVIPNRKFHPAAYRLYMELLRRHASALKCQISGPNYLKIMKSIDDVLHLSKIFGVQASEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPIVTQDMEIDNADNFHEKRNDHHDVLYKRNTMMAIEIIGEFLQNKVTSRILLLAQRNIPSHWEAFIQQLRVLSAKSVILRNSKHTTPEALLQLTSDTRKVLSRKCKTPSQQEFHLLIGSRSLTSASGRCHGTSPSAHWLPIDLFLEDAMDRSEVAATGATERLTGLLKALQAVNSTTWHDTFLGLWLAALRLVQRERDISEGPMPRLDTCLCLLLSISPLAVTNIVEEEKSELIDEIDCSQTTQTKEKQAPGRCHKGLISSLQMLNDYEALLTPPQSVRSVANQAAAKAIMVISGLTVGNGYYECMSSNDMPINCSGNMWHLIVEACIARNLLDTSAYVWPGYVNARPNIPRSVPSQVPGWSSLMKGSPLTPTLVNALIATPASSLAEIEKIYEIATKGSNDEKIYAASILCGASLIRGWNIQEHAILFITSLLSPPVPSDYSESESYLISYAPLLNVLLLGISSADCVQILSLHGMVPILAGLKDLADFLPATLATIVSYFSAEVTRGIWKPVFMNGSDWPSPAANLSNIEQQIKKIIAATGVDVPSLTTGRSSPAMLPLPLAALVSLTITYKLDKASERFLVLIGPALSSLAEGCPWPCMPIIASLWAQKVKRWNDFLVFSASRTVFHHSSDAVVQLLRSCFTSTLGLSPSTIYSNGGVGALIGHGFGSHFSGGMSPVSPGILYLRVHRSVRDIMFMTEEIVSLLMSSVRDIAGSREKPKNTKFGLRYGQVSLGAAMARVKLAASLGASLVWLSGIVAMLGGYALAYFVVLCGTFAWGVDSASPASKRRPKVLGSHLEFLASAVDGKISLGCDYATWRAYVVRFVSLMVGCTQKWILDVNIDVLKRLSYGLIRWNEEELAMALLGLGSVRATTAAAELIIEIGA
Length1076
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.196
Instability index48.42
Isoelectric point7.79
Molecular weight117691.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19503
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     215.89|      54|     123|     667|     720|       1
---------------------------------------------------------------------------
  667-  712 (73.24/42.41)	..........................M.VPILAGL......KDLADFLPATLATIVS............YFSAEVTRGI....WKPVFMNGSDWP
  713-  790 (58.30/32.21)	SPAANLSN.....ieqqikkiiaatgVdVPSLTTG......RSSPAMLPLPLAALVSltitykldkaseRFLVLI..GP....ALSSLAEGCPWP
  792-  840 (47.01/24.51)	..........................M..PIIASL.waqkvKRWNDFLVFSASRTVF............HHSSDAVVQL....LRSCFTSTLGL.
  841-  911 (37.34/17.90)	SPSTIYSNggvgalighgfgshfsggM.SPVSPGIlylrvhRSVRDIMFMT.EEIVS............LLMSSV.RDIagsrEKP.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.51|      15|     123|     315|     329|       2
---------------------------------------------------------------------------
  315-  329 (32.05/17.92)	ASGRCH.GTSPSAHWL
  440-  455 (25.46/12.79)	APGRCHkGLISSLQML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.04|      17|      19|     504|     520|       9
---------------------------------------------------------------------------
  504-  520 (33.78/19.95)	NCSGNMWHLIVEA..CIAR
  524-  542 (28.26/15.58)	DTSAYVWPGYVNArpNIPR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19503 with Med33 domain of Kingdom Viridiplantae
Unable to open file!