<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19499

Description Uncharacterized protein
SequenceMGDGNNTSGRGIGANNTSSSNSEKLEWLQQYNLLGKIGEGTYGLVFLARIKSPTNRGKCIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEYDLYEIIKHHRDKVNHTMNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGDEHGVVKIADFGLARIYQAPLKPLFENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSTPNPFQLDQLDKIFKILGHPTLEKWPTLASLPHWQSDVQHIQTHKYENAGLHSVVHLSPKSPAFDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPSQPGEKIINYPTRPVDQNTDFEGTASIQQPPQSVSSGNVAGGMGAHLGRNGSVNRPMPPPMQRMPQGIMAYNFPSQAGVSGGINPGGMPMQRNLATQAHQQQQLRRKDPGMGMTGYPPQQKSRRIRTDYLTDSTEKLGTKVKWRVGKDEIAHGVMFIIITIKAKKELAGIVDVNGFGVKSCQSAEFAHGQTRLNDICHTKCFKSLRMKSRRWRWIFGKLKLKQCRPALPAIPQQKSLCQATEDQRKHALNLAIATAAAAEIAVAAAQAAAEVVRLANASNHFSNFTTKDRNRAAIKIQTAFRAHLARKALRALKGLVLLQAIIRGQVTRRRAMKNMKCLQSGTEMYPEIKEKVICQDTRRNQSLVHKDQLQVKDIIEHEYYSRRNWNDSVFSKEDAEAVWLRRQEAMAKRERMKKYSYSHRERVNSYMLDESVHVEETGRNSFVEAEANSEGTRRERMMILKHNVASNSSRWEVHGLHGLNSPYLFPRRSFCRVQNQNPAGNESSVPSSPVFPTYMAATESAKAKVRSMSTPRQRLGLSDTCFDHNMPYKGGLSLWSTYNGETFKYQ
Length921
PositionKinase
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.515
Instability index45.07
Isoelectric point9.69
Molecular weight103835.75
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19499
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.51|      40|      42|     363|     404|       1
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  363-  404 (64.17/42.53)	NYPTRPVDQNTDfEGTASIQQPPQSVSSGNVAGGmGAHLGRN
  408-  447 (81.34/44.65)	NRPMPPPMQRMP.QGIMAYNFPSQAGVSGGINPG.GMPMQRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.30|      30|      42|     169|     200|       2
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  169-  200 (48.76/32.05)	LVMGDGDEHGVVKIADFGLarIYQA..PLKPLFE
  214-  245 (49.54/27.10)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPLFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.60|      17|      21|     656|     674|       7
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  656-  674 (22.99/21.93)	RAHLARKalRALKGLVLLQ
  678-  694 (31.62/22.70)	RGQVTRR..RAMKNMKCLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.68|      11|      23|     713|     723|      10
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  713-  723 (19.97/13.04)	RR..NQSLVHKDQ
  737-  749 (14.71/ 7.77)	RRnwNDSVFSKED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19499 with CDK8 domain of Kingdom Viridiplantae
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