<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19498

Description Uncharacterized protein
SequenceMDEVKLPKTRHEGNRGTFVVAPKYQEKKSKSSLMRHWLGGRNGSAGGGGSNLYFRHPSKNLYSIAVRPNHTKSFHIPMAPRLSPDDNLPADSTAVAIDKDKNSPHAVRWAIDHLVISNPIIVLIHVRHRNQGEPESDYDINQLFVPFRGYCARKGIQAREVVLEDVDISKALIDYVSRNLINSIVLGAATRGAISSYLSYRKFKSDIPTTLIKTAPDFCSVYVISKGKILTVRTAQRPVSNTAAPPKAPVGMPPQIPSDQSEDDGYRGQYTRGVPGNAGSERLSFDNSSRAPIRDRHRSSPGNMSLDIDVVRGPSSSRQDSLSSDIDFPAKISLGSVDISGQNLDLSSSNSESSSQSVRDIEDEMRRLKLELKQTMDMYSSACKEALTAKKTANELHQWKMEESRRFEEARQAGEAALAMAEMEKAKCRAAIEAAEAAQKLAEMEAYRRRQAESKAKKESDEKNRALNALATNDVRYRKYSIVEIEEATENFSASNKIGEGGYGPVYKGKLDHTPVAIKILRPDAAQGKKQFQQEVEVLCSIRHPHMVLLLGACPEYGCLVYEYMHNGSLEDRLFRKGNTHPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVGRAIEKGTLADLLDPAVPNWPMEEALSFAQLALQCAELRKRDRPDLATVILPELNRLRDLGYNNNGSSSSGYSQGHGGSDQSQGFNTSG
Length790
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.506
Instability index45.52
Isoelectric point8.93
Molecular weight87382.99
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19498
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.12|      16|      20|     290|     309|       1
---------------------------------------------------------------------------
  290-  309 (24.47/21.99)	RAPIRDRHRSspgnMSLDID
  312-  327 (27.65/13.44)	RGPSSSRQDS....LSSDID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.72|      20|      25|     139|     163|       2
---------------------------------------------------------------------------
  139-  163 (25.21/34.39)	DINQLFVpfrGYCARKGIQAreVVL
  167-  186 (32.51/22.38)	DISKALI...DYVSRNLINS..IVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.25|      21|      25|     380|     403|       3
---------------------------------------------------------------------------
  383-  403 (36.53/28.50)	CKEALTAKKTANELHQWKMEE
  407-  425 (30.66/14.67)	FEEARQAGEAA..LAMAEMEK
  428-  445 (25.06/13.30)	CRAAIEAAEAAQKLAE..ME.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.07|      14|      25|     251|     264|       4
---------------------------------------------------------------------------
  251-  264 (27.58/20.97)	GMPPQIPSDQ.SEDD
  273-  287 (21.49/14.27)	GVPGNAGSERlSFDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.96|      60|     414|      62|     128|       5
---------------------------------------------------------------------------
   62-  128 (90.38/78.49)	YSIAVRPNHTKSFhiPMAPRLSPDDNLPA.....DSTAVAIDKDKnsPHAvrwAIDHLVISNPIIVLIHVRH
  480-  544 (97.57/62.40)	YSIVEIEEATENF..SASNKIGEGGYGPVykgklDHTPVAIKILR..PDA...AQGKKQFQQEVEVLCSIRH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19498 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQRPVSNTAAPPKAPVGMPPQIPSDQSEDDGYRGQYTRGVPGNAGSERLSFDNSSRAPIRDRHRSSPGNMSLDIDVVRGPSSSRQDSLSSDID
235
327










Molecular Recognition Features






MoRF SequenceStartStop




1) LMRHWLGGR
33
41