<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19497

Description Uncharacterized protein
SequenceMARSWRASGSLVALAIVLSGCFFAISIAKEEAAKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNAERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYIYNMKNQINDKDKLADKLESDEKEKVETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGSTEEDDDSHDEL
Length666
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.444
Instability index29.05
Isoelectric point5.13
Molecular weight73382.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19497
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.34|      27|      27|     563|     589|       1
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  539-  562 (29.08/14.94)	..KGRL...SQEEIERMVREAEEFAEEDK
  563-  589 (39.95/22.98)	KVKERI..DARNSLETYIYNMKNQINDKD
  590-  618 (34.62/19.04)	KLADKLesDEKEKVETAVKEALEWLDDNQ
  628-  645 (19.69/ 7.99)	KLKEVE..AVCNPIITAVYQ.........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.30|      11|      27|     232|     242|       2
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  232-  242 (20.46/11.52)	LGGGTFDVSIL
  260-  270 (21.85/12.78)	LGGEDFDQRIM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     336.82|      98|     188|     130|     231|       3
---------------------------------------------------------------------------
  130-  223 (136.17/90.28)	.....DG.......................................KPYIQVKIKDGETKVFSPEEISAMVLTKMKETAEAFLGKK......IKDAVVTVPAYFNDAQ.........................RQATKDAGI...........................IAGLNVARIINEPTaAAIAYGLDKKGG
  227-  410 (91.90/59.73)	ILVFD..lgggtfdvsiltidngvfevlstngdthlggedfdqrimEYFIKL.IKKKHGKDISKDNRALGKLRREAERAKRALSSQ.......HQVRVEIESLFDGVDfsepltrarfeelnndlfrktmgpvKKAMEDAGLqksqideivlvggstripkvqqllkdyFDGKEPNKGVN.PD.EAVAYGAAVQGG
  411-  500 (108.76/64.01)	ILSGEGG.......................................DETKDILLLDVAPLTLGIETVGG.VMTKLIPRNTVIPTKKsqvfttYQDQQTTVSIQVFEGE.........................RSLTKDCRL...........................LGKFDLTGIPPAP..............
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.19|      13|      22|     501|     513|       5
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  501-  513 (23.27/13.03)	RGTPQIE.VTFEVD
  525-  538 (17.92/ 8.56)	KGTGKSEkITITND
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19497 with Med37 domain of Kingdom Viridiplantae
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