<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19495

Description Uncharacterized protein
SequenceMEGMIQDPSQPASQPQQQNQAVVGAERLNQALQQQLNLESVKTRAISLFKAITRILEDFDAYSRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNADNAPILPVMLSSKLLPEMEVEDNLKREQLLLGMQNLPIPSQIDKLKARIDMIAAACESAEKVLADTRKAYCFGSRQGPAILPTLDKGQAAKIQEQENLLRTAVNFGEGLRLPADQKLITPSLPLHLVDIMPAADGVQSFADPSGMYMKNTPLMPNNIGSQGSLLQATGAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPSFCEAIRVTRDISTSICTYASITHFHCTEKILQDLQPPPEITTIVNYYEAERVGVAWGGGVLMQLHGQMQFSEPLGHQQFQGRQLPPGHVQHGIGQSQLNQGNQLSRHLGQFSSAANTALFNAAQGTPSTQMIPNMSATMSSQSLLPRMQEHDSLVLEIYTNP
Length473
PositionHead
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.282
Instability index50.68
Isoelectric point5.83
Molecular weight51641.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19495
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.79|      17|      20|     374|     392|       1
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  374-  392 (29.11/24.89)	QL.HGQMQFSepLGHQQF.QG
  394-  412 (23.68/12.93)	QLpPGHVQHG..IGQSQLnQG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.18|      19|      20|     284|     302|       2
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  264-  288 (25.59/14.87)	NIGSQGSLLQATGAqligrsAASPS
  289-  311 (26.59/15.72)	AATSATSYDNTTTS..plpyANSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.10|      19|      20|     220|     239|       3
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  221-  239 (34.33/21.87)	AD..QKLITPS.LPLHLVDIMP
  241-  262 (27.77/11.45)	ADgvQSFADPSgMYMKNTPLMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.38|      17|      20|     117|     133|       4
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  117-  133 (28.41/17.17)	MLSSKLLPEMEVEDNLK
  138-  154 (28.97/17.64)	LLGMQNLPIPSQIDKLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19495 with Med8 domain of Kingdom Viridiplantae
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