<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19494

Description Uncharacterized protein
SequenceMAICSASILDIKHFGDIMHLFNLAWALVLFLPWFPFSCSFFFLPSMFIFVAQTLPRGPRELSGVVDLISRYKLLPHHDFFCKRPLPLSIADTHYLHNVAGDTEIRKGEGMQLDQLNQNTSHNRDTNARIQPFDFDILKEAFQLRETTPVELPPTEKGLPTIAGKSKGEVKDKERKHKKHKDRDKEKDKEHKKHKHCHKDKDRSKDKDKEKKKDRSGHHGSGADHLKKHHEKKRKHDGDEVRNDINRHKKSKYVDYLLCL
Length259
PositionHead
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.910
Instability index34.27
Isoelectric point9.42
Molecular weight30236.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19494
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.51|      14|      15|     170|     183|       1
---------------------------------------------------------------------------
  170-  183 (27.70/10.65)	KDKERKHKKH....KDRD
  186-  203 (20.58/ 6.35)	KDKEHKKHKHchkdKDRS
  241-  254 (20.24/ 6.15)	RNDINRHKKS....KYVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.17|      11|      19|     206|     216|       2
---------------------------------------------------------------------------
  206-  216 (18.93/ 8.20)	KDKEKKKDRSG
  227-  237 (21.24/10.00)	KHHEKKRKHDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.43|      20|      20|     112|     131|       3
---------------------------------------------------------------------------
  112-  131 (34.77/21.98)	LDQLNQNTSHNRDTNARIQP
  134-  153 (31.66/19.49)	FDILKEAFQLRETTPVELPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.59|      16|      29|      42|      62|       4
---------------------------------------------------------------------------
   42-   62 (23.68/25.25)	FLPSMFIFVAQTLPrgpreLS
   73-   88 (32.91/19.70)	LLPHHDFFCKRPLP.....LS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19494 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETTPVELPPTEKGLPTIAGKSKGEVKDKERKHKKHKDRDKEKDKEHKKHKHCHKDKDRSKDKDKEKKKDRSGHHGSGADHLKKHHEKKRKHDGDEVRNDINRHKKSK
145
251










Molecular Recognition Features






MoRF SequenceStartStop




1) DEVRN
2) DKEHKKHKHCHKDKDRSKDKDKEKKKDRSGHHGSGADHLKKHHEKKRKH
3) DKERKHKKHK
4) KSKYVDY
238
187
171
249
242
235
180
255