<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19493

Description Uncharacterized protein
SequenceMEFSLQSSRLWEEVVEQTKLAKEKGIDPLLWALQVSSSLGTSGIALPSTELAHVLVNYICWDNNIPILWKFLDKALMMKIIPPLLVIALLSQRVMRDLIRKGERVIPSRRSHPAAYRLYLELLKRHAFAFKCQINGLDYQEVMESIDATLHLSEIFDLQTTEPAILVVEFIFSIVWQLLDASLDDEGLLELTEEKVSRWAIKPQEMEIDGHDMYDEKNIVYCERLQNFNTTMAIEIIGQFLQNKATSRILYLARRNILVFQALERSSHWVSFIQSLQLLGANSAALKNSKVLPSEALLELTSDSRIFLSRECKTSSRQKFHAVMAFGSLASSVSLCPGASRSDLWLPLDMVLEDAMDGYLVNTTSAVEIITGLTKTLQAINGTNWHDTFLGLWIASLRLVQRERDPIEGPMPRLDTRLCMLLSIMTLVVADLIEEEEGAPTDETEYGSTNHYHWKEMKFPRKRRADLVSSLQVLGDYQGLLAPPKFVVSAANQAAAKAMLFVSGINVGSAYFECVNIKDMPFSCSGNLRHLIIEACIARNVLDTSAYYWPGYVNGRINQLPYSVPAQAPGWASFMKGAPLTSVMSNALVSSPASSYSFFFPEASLAELEKIFEIAVNGSEDEKISAATILCGASLIRGWNIQEYTVKFITRLMSPPVPADFTGSDSHLIDYAPMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNLSWTLPSGEEISPHAVFSNAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLLVRNSHLLSSENTHKDRNKRRLSEVASSSSPEPVFLDSFPKLKVWYRQHQRCIAATLSGLVHGTTVHQTVDRLLNMMFRKINKGSQSITSVTSGSSSSSGAGIEDNSLKPELPAWDILEAVPYVVDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVSRCVWKPVVMNGMDWPSPAANLSNVEEHIKKILAATGVDVPRLSAGGSSPATLPLPLAAFVSVTITYKIDKASERFLNLAGPALESLAADCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAIVQLLKSCFTATLGLNIAPISSNGGVGALLGHGFGSHFCGGLSPVAPGILYLRVYRSIRDIVFITEEVVSLLMHSVREIACSGLPKQKIDKLKRSKNGMKYGQVSLAAAMTRVKLAASLAASLVWLSGGHGLVQSLIKETLPSWFISVHRSDRDQGSGLVAMLGGYALAYFTVLCGAFAWGVDSSSSASKRRPKILGSHMEFLASALDGKISLGCDGATWHAYVSGFVSLMVGCTPNWVLEVDVDVLRRLSKGLRQWNEEELALALLGIGGVGTMGAAAELLIEHFDS
Length1357
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy0.161
Instability index49.72
Isoelectric point6.23
Molecular weight148779.28
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19493
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.09|      53|     130|    1058|    1111|       1
---------------------------------------------------------------------------
 1058- 1111 (87.25/56.44)	ASRTVFLHNSDAIVQ.LLKSCFTA.TLGLNIAPISSNGGVGALLGhGFG.SHF...CGGL
 1189- 1247 (72.85/41.77)	AASLVWLSGGHGLVQsLIKETLPSwFISVHRSDRDQGSGLVAMLG.GYAlAYFtvlCGAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.43|      64|     153|      68|     153|       2
---------------------------------------------------------------------------
   68-  136 (99.43/108.17)	LWKFLDKALmmkIIPPLLviALLSQRVMRDLIRKGERVIPSRRSHPAAYRLYLELLKRHAFAFKCQING
  175-  238 (111.00/69.92)	VWQLLDASL...DDEGLL..ELTEEKVSRWAIKPQEMEIDGHDMYDEKNIVYCERLQNFNTTMAIEIIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     233.89|      78|     193|     455|     646|       3
---------------------------------------------------------------------------
  467-  588 (88.86/187.55)	LVSSLQVLGDYQGllappkfvvsaanqaaakaMLFVsgINVGSAYFECVNIkdmpFSCSGNLRHLiieACiarNVLDTSAYYwpGYVngrINQLPYSVPaqapgwaSFMKGAPlTSVMSNAL
  661-  738 (145.02/53.31)	FTGSDSHLIDYAP...................MLNV..LIVGIASVDCVQI....FSLHGLVPQL...AC...SLMPICEVF..GSC...VPNLSWTLP.......SGEEISP.HAVFSNAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.46|      15|     133|     826|     846|       6
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  826-  846 (18.71/21.48)	AATLSglvhgtTVHQTVDRLL
  959-  973 (24.76/12.17)	AANLS......NVEEHIKKIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19493 with Med33 domain of Kingdom Viridiplantae
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