<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19489

Description Uncharacterized protein
SequenceMELLNPPHRDPIPGPSFRPRVDRPANTQFPESAEETGGFNAGEKDKVFIAVGKSVEKAVNLLQWTLKRFGVGKLPASQANSRVLSAYRKDEKEQLKKLLENYSNFPRKFKVHISIFTIEANQVHKGIVELVKGHGIRNLVMGAIPENCMRMKKSSSKSSYAAKYVPCFCDIWFVDKGKLVWMREASEKPCLSTPVGQAAVTAKSSRSNSLPHRNSDSLVHPDDLRSNSCLSITFAASSTRLTESIVAQTDVSLSPRLSSFSNLSIPSFTNGSERASSEMRLSLDSYSKDEDENLYRQLGEACMEAKASKNEALVESLKCQKLESEAMEAINKIKDLKSAHVHEVKLREKAEESLRATVREREKLIKEKEEAMEELQRTTRNITLLNDCVQEANCKHDEVAGKLKLIQASIVTLREEKQRIRRQKLEAVRWLERWRSRGQAGATTCNGFIGIVEDLPELAEFSLADVQTATCNFSESFKIGKGGHGCVYKGEMLGRTVAIKKLYPHNMQGQSEFQQEAQVLSKLQHPHLVTLLGVCPEAWSLVYEYVPNGSLQDRLFRKTSVSPLTWKIRARIVAEISSALCFLHSAKPEKIVHGDLKPENILLDSELSCKICDFGISRLVTEDNLYCPSFHCSTEPKGAFPYSDPEFWRIGVPTPKSDIYAFGLIILQMLTRRPPVGLAGEVRKAISSGKLASILDKSAGEWPMFVARRLVDLGLQCCEPYSRDRPDLKPSLVRELGQLHVTEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLENGRETSPMTNLKLSHLHLTPNHAIRQAIQNWLCKA
Length817
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.390
Instability index39.57
Isoelectric point8.65
Molecular weight91643.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19489
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.80|      20|      32|     217|     238|       1
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  217-  238 (31.42/26.95)	SLvhPDDLRSNSCLSI.TFAASS
  252-  272 (31.37/19.40)	SL..SPRLSSFSNLSIpSFTNGS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.30|      45|     730|      13|      61|       4
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   13-   61 (68.75/54.04)	PGPSF..RPRVDRPANTqfPESAEEtgGFN.AGEKDKVFIAVGKSVEKAVNL
  746-  793 (74.55/45.66)	PVPSFflCPILQEIMHD..PQVAAD..GFTyEGEALRGWLENGRETSPMTNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.07|      28|      69|     290|     319|       7
---------------------------------------------------------------------------
  290-  319 (42.68/32.51)	EDENLYRQLGEACME.AKASKNEALVEslKC
  360-  388 (41.39/25.01)	EREKLIKEKEEAMEElQRTTRNITLLN..DC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19489 with Med32 domain of Kingdom Viridiplantae
Unable to open file!