<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19488

Description Uncharacterized protein
SequenceMNQQPGLGDNKESEEEPVAQPVDSAVKLGLEKPVGSEPVSGVGEDEVFVASSGKSEDTVMEEDPVNPATVFCIWLKQPKSNLRYKMRVPELCRNFSAVAWCGKLNAIACATETCARIPSSNANPPFWIPIQIVIPERPTECAVFNVTADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPAHLVRDASFWKREHEWRQDIAVVTKWLSGVSPYRWLSSKSSNPANSKSTFEEKFLSQQSQNSARWPNFLCVCSVFSSGSVQLHWSQWPPTQGSVARKWFCTSKGILGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGTGNGFQATARTSTSNGIPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKTADQDFNDVVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPTITGWRVQRWESSLQPVVLHNIFGNPSSSFGGQAPKQTVWLSKVDTSIPPTNDFKSHQAAAAGPTSDSRKASDSSSEKLKRVSFDPFDLPSDVRTLARIVYSAHGGEIAISFLRGGVHIFSGPNFSAVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTMLKIIRVLPPAISSSQIKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVSEPWQASGETLSSIDPEAMAVDPALVQSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSSATPATSQAGQSGTTSSTGSTQMQAWVQGAIAKISGSTDGVSTSTPNTISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRALQPRFAQRNTDANPQKNQPGAPGKMEEVNSVAAKPTTMTRPDEAHGARAGQLVPGAKGAEEGPRGLKIGSGNAGQGYTFEEVKVLFLILMDLCRRTSGLPHPLPVSQVGSSSIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPSSEEWHRRNMFGGPWSDLEDMSPGDDIPRLSNSIDMPDTSSMESSNVHYGVQTLWPRKRRLSERDAAFGLNTSVDLGAYLGIMGSRRDVATAVWKIGLEGVWYKCMRCLRQTSAFASADSTHQPSQNERVSWWISRWAYGCPMCGGPWVRVV
Length1248
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.216
Instability index43.95
Isoelectric point6.44
Molecular weight135038.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19488
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.78|      17|      19|     788|     804|       1
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  788-  804 (28.66/19.62)	IQAYVDAVLDLASHFIT
  806-  822 (30.12/20.99)	LRRYASFCRTLASHAVT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.47|      14|      19|     238|     254|       2
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  222-  235 (22.86/ 6.48)	RWLSSKSSNPANSK
  241-  254 (26.61/18.87)	KFLSQQSQNSARWP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     531.15|     171|     568|     474|     673|       3
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  474-  673 (260.35/199.18)	SSLQpVVLHNIFGN....PSSsfggqapkqtvwlskVDTSIPP..TNDFKSHQAAAAGPTSDSRKASDSSSEKLKRVSF.DPF.DL....P.SDVRTLARIVYSAHGGEIAISFLRGGVHIFsGPN...FSAVD.....NYQINVGSAIAapAFSSTSCCSASVWHdTSKDRTMLKIIRVLPpaiSSSQIKANSSTWERAIAERF.WWsllvgVDWWdAVGC
 1045- 1237 (270.79/148.70)	SSIQ.VRLHYIDGNytvlPEV...............VEASLGPhmQNMPRPRGADAAGLLLRELELHPSSEEWHRRNMFgGPWsDLedmsPgDDIPRLSNSIDMPDTSSMESSNVHYGVQTL.WPRkrrLSERDaafglNTSVDLGAYLG..IMGSRRDVATAVWK.IGLEGVWYKCMRCLR...QTSAFASADSTHQPSQNERVsWW.....ISRW.AYGC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      59.09|      12|      19|       7|      18|       4
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    7-   18 (20.68/12.67)	LGDNKESEEEPV
   28-   39 (19.76/11.74)	LGLEKPVGSEPV
   54-   65 (18.65/10.62)	KSEDTVMEEDPV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.82|      19|      21|     833|     853|       5
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  835-  853 (33.66/20.53)	PTQSSATPATSQ...AGQSGTT
  855-  876 (29.16/10.93)	STGSTQMQAWVQgaiAKISGST
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.00|      18|      21|     160|     177|       6
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  138-  152 (20.98/ 8.94)	...PTECAVFNVT..AD.SPR
  160-  177 (36.18/21.37)	WS.PTSCPRALLI..ANFHGR
  181-  200 (24.84/12.10)	WTqPSQGP.AHLVrdASFWKR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.68|      29|     233|      98|     127|       7
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   98-  127 (56.24/31.96)	VAW...CGKLNAI.ACA.TETCARIPSSnANPPFW
  328-  361 (46.44/21.85)	VVWevtPGTGNGFqATArTSTSNGIPPS.VNPPNW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.29|      10|      18|     753|     762|       8
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  753-  762 (17.09/ 7.70)	VNPSALVSEP
  773-  782 (18.20/ 8.65)	IDPEAMAVDP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.58|      17|      24|     878|     894|      11
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  878-  894 (30.73/19.20)	GVSTSTPN.TISGPSSFM
  901-  918 (28.85/17.48)	GTFPGTPAvRLIGDCHFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19488 with Med16 domain of Kingdom Viridiplantae
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