<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19484

Description Uncharacterized protein
SequenceMQPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDMLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPVSVPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGFRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVMPVTATHELNGLRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEDIEQILEKISMCIQNCIKKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAKVITQDAAAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDLEEEKHTDVKGRSSGGDFGRYSSGLYSRWESKACCVTG
Length818
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.620
Instability index56.92
Isoelectric point7.19
Molecular weight89462.85
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19484
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     444.22|      66|      66|     484|     549|       1
---------------------------------------------------------------------------
  424-  479 (72.69/35.01)	.......IMQFKEMLKE..RGVAPF....SKWEKELP.KIVFDPRFKA....IpSHSARRSL...FEHYV.K..TRAEEE
  484-  549 (106.29/54.12)	RAAQKAAIEGFKQLLDEASEDIDHD....TNYQTFKR.KWGSDPRFEA....L.DRKDRELL...LNERV.LLLKRAAEE
  552-  615 (99.91/50.49)	RAIRAAAASSFKSMLKE.KGDINVN....SRWSRVKD.SLRDDPRYKC....V.KHEDREVL...FNEYI.SELK.AIEE
  643-  711 (84.68/41.83)	NCIKKEAVASFQALLVETIK..DPQ....ASWTESKP.KLEKDPQGRAanpdL.DSSDMEKL...FREHIkMLFERCVND
  713-  772 (56.75/25.95)	RALLAKVIT...Q..DAAAQETEGGktalNSWSTAKR.LLKPDPRYNK....M.PRKEREALwrrYAEDM.L........
  775-  810 (23.90/ 7.26)	...QKSALD....LEEEKHTDVKGR....SSGGDFGRySSGLYSRWE.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     260.04|      50|      58|       4|      53|       2
---------------------------------------------------------------------------
    4-   51 (75.39/28.94)	........P...LP....VPQGA...LSSSASFSFTPNPQLVQNAQIQPSKSDMLAT.GTQAMAASS
   52-  111 (68.50/25.69)	PStvsqsgP...LP....VHNSSeftMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTsGTPGHPVSV
  150-  190 (51.91/17.89)	........PytsLPsmvsSPQGY...WMQHPPMGGFPRPPFVPYPTVYPG...............PF
  191-  237 (64.24/23.69)	PS.tssgmP...LP....APS......SDSQPPGFRP....LGMSPFAPSAA.ALAN.QSLAILTGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.64|      14|      16|     330|     343|       3
---------------------------------------------------------------------------
  330-  343 (25.34/18.48)	DAM..PLRTSVVPGSS
  347-  362 (20.30/12.90)	DLIkkKLQDPGVPSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.63|      13|      16|     295|     307|       4
---------------------------------------------------------------------------
  295-  307 (21.99/10.97)	KGEEN.AVSVPNID
  312-  325 (17.64/ 7.41)	KGSTPiSLSAPAVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19484 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQF
2) MQPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDMLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPVSVPSIQMIT
377
1
427
118










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
348
353