<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19483

Description Uncharacterized protein
SequenceMAFNLPLLFLLFFLPFVFPSYALPESDILLKFKSTLNNASALKSWDSNPQPPCNGPTANWIGVLCNHGAIWGLKLEAMGLSGTIDVNTLKDLPNLTTLSFMNNSFNGPIPELNKLKELRSAYLSFNKFSGQIPANAFDGLILIKKLQLSQNQFTGAIPASLATLPKLTELKLDGNQFSGQIPDFKLPIQTLDLSNNQLEGPIPASLSKMDAQVFAGNKGLCGGPLKALMMMKRPRKQEATPSSVEAPPSKVRAKGYKGEEHGSPGNSRNGKRAPEATVKLTFVRDDRERFDLPDLLKASAEVLGSGSFGSSFKAALSIGPVVVVKRYKQMNNAGKEEFLEHMRRIGRLTHENLLPLVAYYYRKEEKLLVSDFVKNGSLAVHLHGRKSTGQPTLDWPTRLKIVKGVVKGLAYLHKELPSLIVPHGHLKSSNVLLNETCEPLLTDYGLIPIINQESAKKLMVAYKSPEYAQQGKITRKSDVWALGILILELLTGMFPGNFKGKESDHHQEEDLANWVKSVVGDQERPSKDMEVFDKEMGTINDSDGELMQELLKIGLSCCEEDVEKRLDLKDAVGRIEELKRKDDDGIGLNLEGPSRPRLVVKGVGGSHVKMSDVNDEVAKAYKQQLESQAKEVFLPFRCFCSRKDIKCNEVILEDTDISKALIDYVSSFPIETLVLGAPSRSGFVSQYNFSFCSEESGRTSWSSHNMDDVEAEMRRLKQELKQTMDMYSAACKEALSAKKKAMELQSWKMQEEQKKEEARVAEKAALSLAETEKAKSTDNFSPSRKIGGGGYGPVYHSNLDHTPVAIKVLRPDATQGQSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFMHNNSPVLPWQIRFRIAAEIATGLLFLHHTKPKPLVHRDLKPANILLDHNYVSKISDVGLARLVPPSVANSVTQYRMTSAAGTFCYIDPEYQQTGMLGIKSDVYSLGIMLLQIITAKPPMGLAHRVENAIEEGSFAEILDPAVTDWPLEEALSFAKLALKCAELRRRDRPDLGQVVLPHLNKLRDLAESNMPFMTFGGSAGPSPNNTQVSTSSMLQDFLNQPPQFLHSECDSISSGSD
Length1101
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.299
Instability index41.69
Isoelectric point6.80
Molecular weight121912.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19483
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     507.80|     152|     618|     273|     478|       1
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  296-  452 (239.79/172.58)	LKASAEVlGSGSFGSSFKAALSIGPvVVVKRYKQMNNAGKEEFLEHMRRIGRLTHENLLPLVAYYyrKEEKLLVSDFVKNGSLAVHLHGRKSTgQPTL.DWPTR..LKIVKGVVKGLAYLHKELPSL...IVPHGHLKSSNVLLNETCEPLLTDYG...LIP..IINQ
  780-  934 (252.20/133.14)	FSPSRKI.GGGGYGPVYHSNLDHTP.VAIKVLRPDATQGQSQFQQEVEVLSCIRHPNMVLLLGAC..PEYGCLVYEYMANGSLEDRLFMHNNS..PVL.PWQIR..FRIAAEIATGLLFLHHTKPKP...LV.HRDLKPANILLDHNYVSKISDVGlarLVPpsVANS
  989- 1042 (15.81/42.75)	.........................................................................VENAIEEGSFAEIL.......DPAVtDWPLEeaLSFAKLALKCAELRRRDRPDLgqvVLPH..................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      92.21|      12|      23|     123|     134|       2
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  123-  134 (25.40/14.90)	LSFNKFSGQIPA
  148-  159 (23.90/13.56)	LSQNQFTGAIPA
  172-  182 (18.83/ 9.03)	LDGNQFSGQIP.
  193-  204 (24.08/13.73)	LSNNQLEGPIPA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.69|      34|     485|     462|     495|       3
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  462-  495 (63.65/52.56)	YKSPEYAQQGKITRKSDVWALGILILELLTGMFP
  949-  982 (64.04/52.94)	YIDPEYQQTGMLGIKSDVYSLGIMLLQIITAKPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.36|      16|     480|     226|     278|       8
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  207-  224 (25.99/38.34)	SKMDAQVFAGNKglCGGP
  249-  264 (29.37/22.08)	SKVRAKGYKGEE..HGSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.74|      29|     273|     266|     294|      10
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  266-  294 (50.64/32.01)	NSRNGKRAPE.ATVKLTFVRDDRE.RFDLPD
  540-  570 (42.10/25.44)	NDSDGELMQElLKIGLSCCEEDVEkRLDLKD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19483 with Med32 domain of Kingdom Viridiplantae
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