<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19479

Description Uncharacterized protein
SequenceMQRYHAPSCTSAVNNSAIGGASVRDTPRADSSSLPPNFSLNSRRQSQLAPYKLKCDKEHLNSRLGPPDFHPQTQNCPEETLTREKCAAWHPYADFCCIIIIIGSPLNYYGLGTSSDVYADSKEISLTQVQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLSKPGVFPEQRPCNEDFRKKWIEGLSLQHKPLCSLADQVPLGYKKRPLIEVLIRNNVPLLKATWFIKVTYLNQVCPGSAISSGAPDKTQLSRTELWTKDVIDYLQYLLDEFFSRNNSHSTQHGRDRLPQIHYAGSLQHRSDLAPAVIDGEEPSLHFKWWYVVRLLQWHHAEGLVLPSLIIDWVLNQLQEKDLLEILQLLLPIIYGVLETIILCQTYVRNLVGVAIRFIREPSPGGSDLVDNSRRAYTISALVEMLRYLIQATPDTFVALDCFPLPTSDAYAVRGKGFDSQYQSLSFNHVVSTVEKRADNLAKGATAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYDGAVGEGWVAEVSPCLRSSLKWLQTVNLSLICSVFFLCEWATCDYRDFRTAPPSDVKFTGSKDFSQIYLAIQLLKLKMKELQKKLKKGRTSRKNTSQQNSYSSKDLLGDTHEAKSNGKGLNGRRRNFSDIFDSPGPLHDIIVCWIDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQLLVSGIIDTNGPMADLNRRKRHQRVLKQLPGQFMLNALEEARIAEGSELLEAINVSCDKRRTVQASKTFRREVGLEELKASISVLLQFPSSSFCSADSGEDESQGSIKRSIGSTHSKMDSVEGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDTWWVRKGPKNLEGSKVDPLLKSTKQASRGRQKPVRKTQSLAQLAAARIEDSQGASTSHVCDNKISCPHHRTEVENLKPVDGIRTTHHADIISIGRGLKQLRFVEKRVVTIWLLSVVRQLVEESEKSVPKASQYGRPFVAADEKSPLRWKLGEDELSAILYLLDVSCDSASAVKFLLWLLPKAISNPSPSIHSGRNILMVPRNVENYACEVGEAYLLSSLRRYENILIAADLVPEALSATMRHVASFMATNGRITGSGALVFACYLLRRYGSIASVIEWEKNFKETCDKRLLSELESGRTEGEFGFPHGVPAGTEDPDDYCRQRINVGRLSRAGVSMRDMVQRRIDDVLHYILGKERKHFAANTPRSPATEKGDDDYQVAQQIIMGLMDCFWQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPDFTSGSTYSNYQPPMNYLNFAKRLLHIHLICLCLLKEALGERKSQAFEIALATEAFSALAVAFAPAKSSRGQLLSPDSLDSHANISNDNSHSSAKATLGRTAKMAAAVSALVIGAIIHGVISLERMVSVLRLKEGLDVVQFVRSTKTSSNGNARSVGAFKVDNSVEVYVHLFRLFVGNCRTVCDGLVLELLGEQSVLALSRMQRLLPINLVFPPAYAIFAFMIWKPFILNSNTARSEDIHQLYQSLTVAIGDAIKHRPFRDVCMRDTRGFYDIVAADTTDAEFAAMLELNGLDMHLKSMVFVPLRARLFLNAIIDCKMPNSAFTQDDGNRVSGHSESKALRAETSKLLDKLVCALDTLQPAKFHWQWVELRLLLNEQALIDKIENHDMSIVDAIRSSSPSSERATPSESEKVFIEIILTRLLVRPDAAPLFSEVVHLFGRSLEDSMLMQAKWFLGGLDVLLGRKTVRQRLSNIAENKNLSTKSQFWKPWGWSYSGVDPVTNSGEKRKSEVTSLEEGEVIEEGMESKGCVKGSTQVDIEGSGINQQHVTEKAFIELVIPCIDQSSADSHNTFASDLIKQFNTIEQQINSVTRGVSKQTGTASSGIEGPTNKINNRKGIRGGSPGLAKRTPAPVESAPPPSPAALRASMSLRLQFIVRLLPIICADGEPSARSMRNMLASVILRLLGSRVVHEDVDLSSNLAQLKRDMELMPVVASTEMSGDSLFDRLLLVLHGLLSSCKPSWLKSKDAKDFSGFDREAVEGLQNELDSMQLPEMIRWRIQAAMPILFPSFHNTVSCQPPSVPIGALSLLQPSFCVPGSYTGTINPSQRQVASARNANNMPGKSKSVLSQENDMEIDPWTLLEYGAGSGPSSSSTAAIGGSDNANLRASSWLKGAVRVRRTDPSYIGAVDDDS
Length2197
PositionKinase
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.239
Instability index48.66
Isoelectric point8.51
Molecular weight243190.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19479
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.81|      29|      29|      31|      59|       1
---------------------------------------------------------------------------
   31-   59 (50.87/36.18)	SSSLPPNFSLNSRRQSQLAPYKLKCDKEH
   62-   90 (55.94/40.73)	SRLGPPDFHPQTQNCPEETLTREKCAAWH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.71|      28|      31|    1856|    1883|       2
---------------------------------------------------------------------------
 1856- 1883 (45.96/34.34)	TFASDLIKQFNTIEQQ..INSVTRGVSKQT
 1885- 1914 (42.75/31.31)	TASSGIEGPTNKINNRkgIRGGSPGLAKRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.99|      20|      31|     254|     276|       3
---------------------------------------------------------------------------
  254-  276 (29.02/25.46)	SSGAPDKTQLSRTELwtkDVIDY
  286-  305 (37.96/22.82)	SRNNSHSTQHGRDRL...PQIHY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.07|      38|     224|     997|    1124|       4
---------------------------------------------------------------------------
  997- 1035 (60.39/153.88)	RPFVAADEKSPLRWKlGEDELSA....ILYLLDVSCDSASAVK
 1219- 1260 (66.68/10.69)	KHFAANTPRSPATEK.GDDDYQVaqqiIMGLMDCFWQTGGAFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.42|      62|      63|    1567|    1629|       6
---------------------------------------------------------------------------
 1567- 1597 (36.79/16.30)	....................................................AEFAAMLELNGLDMHLKSMVF....VPLRARLFLN
 1598- 1661 (79.52/49.09)	AIIDcKMPNSAFTQDDGNRVSGHSESKALRAE...................tSKLLDKL.VCALDT.LQPAKFhwqwVELR..LLLN
 1664- 1740 (78.11/43.27)	ALID.KIENHDMSIVDAIRSSSPSSERATPSEsekvfieiiltrllvrpdaaPLFSEVVHLFGRSLE.DSML.......MQAKWFL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.09|      12|      55|     652|     663|       7
---------------------------------------------------------------------------
  652-  663 (24.62/13.65)	SDIFDSPGPLHD
  708-  719 (23.46/12.64)	SGIIDTNGPMAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.51|      18|      27|    1924|    1944|      11
---------------------------------------------------------------------------
 1924- 1944 (25.92/24.05)	PSPAALRASMSlrlQFIVRLL
 1953- 1970 (30.58/19.15)	PSARSMRNMLA...SVILRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.98|      24|      26|     182|     205|      14
---------------------------------------------------------------------------
  149-  174 (21.92/10.56)	..RAINESRAQK.RkagqVYGVPLSGSLL
  182-  205 (44.92/30.52)	EQRPCNEDFRKK.W....IEGLSLQHKPL
  210-  232 (29.13/16.81)	DQVP..LGYKKRpL....IEVLIRNNVPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19479 with Med12 domain of Kingdom Viridiplantae
Unable to open file!