<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19477

Description Uncharacterized protein
SequenceMPDQSNSVESHKCYDKLPKVNWLQHFDAHDKFARQKKFLCTNFLFSLEGQKPQGTMFARLELFYGNLSQAWQILSSLPASCRTYLKPGTSAPVKTSTDEISHNRRGRSTLVEPSGMKWSEHMHVHPNSSETDGKVNGFGRCMTSSFPSNNANTMESGNNLRGNSGITTSMFSHSNSKVSGGSLKNQTFHGVQQEQSAEVLANEIDDDDLLKDIDVDQIVSEHYQSTCTPQPSVSKFPPITPSVDKNAFAGQETCLPPELCSNCSHGCKLGHCPEAASHVQEMKDMLIAVSNELLDNATNLSSEQIEKLRQDRLQLNKQIQQLEKYISDVERQKSNFSASTATLSFQYGTPQTTSLRPNPIQFDTQVHSRNEPNGYDNWNSPTVPFSSVNSFGVPSGPIEREPYIPQIIDVNYIEGSNDQKWSSRDFPWTRKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQANIPAAYLSANMDWSEQQEILRELTSDYCKYKLLYVTPEKVARSDVLLRHLNILNSRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKTPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCVEDIDKFIKENHFDECGIIYCLSRMDCEKVSEKLQEYGHKAAFYHGNMDPAQRAFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCLLYYSYSDYIRVKHMISQGAAEQSPLITGHSRFNNSGRILETNTENLLRMVSYCENDVDCRRLLQLLHFGEKFDSTHCQKTCDNCCKTRSSVDKDVTNIAKQLVELVKLTGQQFSSSHILEVYRGSLSQFVKKHRHETLSLHGVGKHLAKGEASRIIHHLVVEEYLLEDVKKSDIYGSVSSVLKVNESKVKNLFSGRQAIIIRFPSTVKVGKLSKPEVTPAKGSLTTSGKLSPPRVDTPAQSQSIVDLNLSAKLYSALRMLRTILVKEAGEGVMAYHIFGNATLQHISKRVPRTKEELLEINGIGAKILKYGDRLLETIEATIKEHYKTDKINSGSSNDSNDSAKRRRNTNANIDNNDDFSRSTGRSKRRTVERQDKDGNSDNNHQYPADENDLDFDDLDYVYDVESKENRPQVEVNINGRMLPSWPRT
Length1164
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.600
Instability index47.40
Isoelectric point8.00
Molecular weight131207.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19477
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     212.20|      69|     157|     841|     916|       1
---------------------------------------------------------------------------
  841-  916 (105.85/106.82)	LVKLTGQQFSSSHIL.EVYRGSLSQFVKKHRHETLSLHGVGKHLAKgEASRI...IHHLVVEEYlledvkKSDIYGSVSS
 1000- 1072 (106.36/86.78)	LVKEAGEGVMAYHIFgNATLQHISKRVPRTKEELLEINGIGAKILK.YGDRLletIEATIKEHY......KTDKINSGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.43|      23|     301|     117|     139|       2
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  117-  139 (45.42/29.12)	KWSEHMHVHPNSSETDGKVNGFG
  377-  392 (30.77/17.18)	NWNSPTV..PFSS.....VNSFG
  420-  441 (37.25/22.46)	KWSSRDFPWTRKLEANNK.KVFG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19477 with Med34 domain of Kingdom Viridiplantae
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