<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19476

Description Uncharacterized protein
SequenceMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLRQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQSQNLIDQQQQLYQSQRAVPETSSNSTAQTGHSNGGDWQEEVYQKIKAMKETYFPELNMMHEKISATLLQHDSLPQQTKSAWLEKMKLFKTMLERILSFLTISRAAIVPAFKDKLSSYEDQIGKFIIANRPRKLVSALQQGQLLPTHMHSMQQPQPESNQTQSHDNQMNPLFPSMMRPAQMPQLKKQMPRLQQLQLLQMLQQRGMHRVDELQSPAKIKTNELSYLHQIDIDSGVLQENLPSNQLPGYEQASSEYHAPDTAGIGVPPIMSIPPLLPGFKEVNDTSGNALTTDFGKPDIAEQPHDLKVNMAKPKSLSATVVTMVDEAVTSVGEDLAAMRKQGLHARNFFTQTGMSGAEKMRCYLSALVILALLIFFIFNLNHQY
Length470
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.599
Instability index58.20
Isoelectric point8.43
Molecular weight53001.85
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19476
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     149.35|      25|      26|      22|      46|       1
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   22-   46 (48.90/19.71)	Q.QTAPN...LLPTQGQTSQQPQQQQQLM
   48-   73 (34.35/11.48)	QmQSQPT...QLRQQLGLQQQPNQVQQNM
  227-  249 (38.40/13.77)	Q.QG..Q...LLPTHMHSMQQPQPESNQT
  250-  276 (27.70/ 7.72)	Q.SHDNQmnpLFPSMMRPAQMPQLKKQM.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.01|      27|      28|      83|     110|       2
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   83-  110 (40.70/24.87)	TSSSLLQSqNLIDQQQQLYQSQRAVPET
  114-  140 (48.32/25.82)	STAQTGHS.NGGDWQEEVYQKIKAMKET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.82|      27|      27|     333|     359|       3
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  333-  359 (50.01/36.65)	PGYEQASSEYHAPDTAGIGVPPIMSIP
  363-  389 (47.81/34.70)	PGFKEVNDTSGNALTTDFGKPDIAEQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19476 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLPTHMHSMQQPQPESNQTQSHDNQMNPLFPSMMRPAQMPQLKKQM
2) MQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLRQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQ
3) QLYQSQRAVPETSSNSTAQTGHSNGGDWQEE
231
1
99
276
89
129










Molecular Recognition Features






MoRF SequenceStartStop




NANANA